RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 WASF1Q92558 559 aa16.87■□□□□ 0.29
COLCA1-204ENST00000540738 ARHGEF12Q9NZN5 1544 aa16.87■□□□□ 0.29
COLCA1-204ENST00000540738 F6X3S4 739 aa16.87■□□□□ 0.29
COLCA1-204ENST00000540738 RARSP54136 660 aaKnown RBP16.87■□□□□ 0.29
COLCA1-204ENST00000540738 C16orf71Q8IYS4 520 aaPredicted RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 OGFOD1Q8N543 542 aa16.86■□□□□ 0.29
COLCA1-204ENST00000540738 MBIPQ9NS73 344 aa16.86■□□□□ 0.29
COLCA1-204ENST00000540738 MAP4K4O95819 1239 aaPredicted RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 UQCRFS1P1P0C7P4 283 aa16.86■□□□□ 0.29
COLCA1-204ENST00000540738 PDE4CQ08493 712 aa16.86■□□□□ 0.29
COLCA1-204ENST00000540738 ZNF444Q8N0Y2 327 aaPredicted RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 RNF41Q9H4P4 317 aaPredicted RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 EPS15P42566 896 aa16.86■□□□□ 0.29
COLCA1-204ENST00000540738 ZGPATQ8N5A5 531 aaKnown RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 JDP2Q8WYK2 163 aa16.86■□□□□ 0.29
COLCA1-204ENST00000540738 CCNL1Q9UK58 526 aaPredicted RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 SASS6Q6UVJ0 657 aa16.86■□□□□ 0.29
COLCA1-204ENST00000540738 LRRFIP2Q9Y608 721 aaKnown RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 NKTRP30414 1462 aaKnown RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 HLA-DOAP06340 250 aa16.86■□□□□ 0.29
COLCA1-204ENST00000540738 NAP1L5Q96NT1 182 aaPredicted RBP16.86■□□□□ 0.29
COLCA1-204ENST00000540738 MX1P20591 662 aa16.85■□□□□ 0.29
COLCA1-204ENST00000540738 XAGE3Q8WTP9 111 aa16.85■□□□□ 0.29
COLCA1-204ENST00000540738 NPHP4O75161 1426 aaPredicted RBP16.85■□□□□ 0.29
COLCA1-204ENST00000540738 ZNF76P36508 570 aa16.85■□□□□ 0.29
COLCA1-204ENST00000540738 SLC39A6Q13433 755 aa16.85■□□□□ 0.29
COLCA1-204ENST00000540738 NUTM1Q86Y26 1132 aa16.85■□□□□ 0.29
COLCA1-204ENST00000540738 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.85■□□□□ 0.29
COLCA1-204ENST00000540738 KDM4AO75164 1064 aa16.85■□□□□ 0.29
COLCA1-204ENST00000540738 CABP5Q9NP86 173 aa16.85■□□□□ 0.29
COLCA1-204ENST00000540738 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.84■□□□□ 0.29
COLCA1-204ENST00000540738 OLFM4Q6UX06 510 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 MYO5CQ9NQX4 1742 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 MAP3K5Q99683 1374 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 FAM83GA6ND36 823 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 CWC27Q6UX04 472 aaKnown RBP16.84■□□□□ 0.29
COLCA1-204ENST00000540738 NFATC2IPQ8NCF5 419 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 ABCA8O94911 1581 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 EYA3Q99504 573 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 MAP3K19Q56UN5 1328 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 ALDH1L1O75891 902 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 COPS6Q7L5N1 327 aa16.84■□□□□ 0.29
COLCA1-204ENST00000540738 SEC63Q9UGP8 760 aaKnown RBP16.84■□□□□ 0.29
COLCA1-204ENST00000540738 EDC4Q6P2E9 1401 aaKnown RBP16.84■□□□□ 0.29
COLCA1-204ENST00000540738 MINDY4BA8MYZ0 360 aa16.83■□□□□ 0.29
COLCA1-204ENST00000540738 FAM98CQ17RN3 349 aaKnown RBP16.83■□□□□ 0.29
COLCA1-204ENST00000540738 SDF4Q9BRK5 362 aa16.83■□□□□ 0.29
COLCA1-204ENST00000540738 GNPATO15228 680 aa16.83■□□□□ 0.29
COLCA1-204ENST00000540738 TNIP1Q15025 636 aa16.83■□□□□ 0.29
COLCA1-204ENST00000540738 FBLN1P23142 703 aa16.83■□□□□ 0.28
COLCA1-204ENST00000540738 NF2P35240 595 aa16.83■□□□□ 0.28
COLCA1-204ENST00000540738 CHD1O14646 1710 aa16.83■□□□□ 0.28
COLCA1-204ENST00000540738 IQCA1Q86XH1 822 aa16.83■□□□□ 0.28
COLCA1-204ENST00000540738 AEBP1Q8IUX7 1158 aa16.83■□□□□ 0.28
COLCA1-204ENST00000540738 ZRANB1Q9UGI0 708 aa16.83■□□□□ 0.28
COLCA1-204ENST00000540738 EYA1Q99502 592 aa16.83■□□□□ 0.28
COLCA1-204ENST00000540738 SBNO1A3KN83 1393 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 FEZ1Q99689 392 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 MLH3Q9UHC1 1453 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 LTKP29376 864 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 STK38Q15208 465 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 ZNF772Q68DY9 489 aaPredicted RBP16.82■□□□□ 0.28
COLCA1-204ENST00000540738 ZSCAN31Q96LW9 406 aaPredicted RBP16.82■□□□□ 0.28
COLCA1-204ENST00000540738 A0A1W2PP64 1363 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 BOLA2Q9H3K6 86 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 CLEC11AQ9Y240 323 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 TMEM94Q12767 1356 aa16.82■□□□□ 0.28
COLCA1-204ENST00000540738 NAT10Q9H0A0 1025 aaKnown RBP16.82■□□□□ 0.28
COLCA1-204ENST00000540738 CCDC196A0A1B0GTZ2 297 aa16.81■□□□□ 0.28
COLCA1-204ENST00000540738 CHPF2Q9P2E5 772 aa16.81■□□□□ 0.28
COLCA1-204ENST00000540738 SOS1Q07889 1333 aaPredicted RBP16.81■□□□□ 0.28
COLCA1-204ENST00000540738 MTHFSDQ2M296 383 aaKnown RBP16.81■□□□□ 0.28
COLCA1-204ENST00000540738 COL17A1Q9UMD9 1497 aaPredicted RBP16.81■□□□□ 0.28
COLCA1-204ENST00000540738 KSR2Q6VAB6 950 aa16.81■□□□□ 0.28
COLCA1-204ENST00000540738 ZNF804AQ7Z570 1209 aa16.81■□□□□ 0.28
COLCA1-204ENST00000540738 ZC3H12CQ9C0D7 883 aaKnown RBP16.81■□□□□ 0.28
COLCA1-204ENST00000540738 ARHGEF5Q12774 1597 aa16.81■□□□□ 0.28
COLCA1-204ENST00000540738 TRPC5Q9UL62 973 aaPredicted RBP16.8■□□□□ 0.28
COLCA1-204ENST00000540738 PIP4K2AP48426 406 aaPredicted RBP16.8■□□□□ 0.28
COLCA1-204ENST00000540738 PLEKHG1Q9ULL1 1385 aa16.8■□□□□ 0.28
COLCA1-204ENST00000540738 PDIA4P13667 645 aaKnown RBP16.8■□□□□ 0.28
COLCA1-204ENST00000540738 PPP4R3BQ5MIZ7 849 aa16.8■□□□□ 0.28
COLCA1-204ENST00000540738 WDR78Q5VTH9 848 aa16.8■□□□□ 0.28
COLCA1-204ENST00000540738 CTCFLQ8NI51 663 aaPredicted RBP16.8■□□□□ 0.28
COLCA1-204ENST00000540738 NLRP1Q9C000 1473 aa16.79■□□□□ 0.28
COLCA1-204ENST00000540738 RNMTO43148 476 aaKnown RBP16.79■□□□□ 0.28
COLCA1-204ENST00000540738 CT47A1Q5JQC4 288 aaPredicted RBP16.79■□□□□ 0.28
COLCA1-204ENST00000540738 PLEKHG3A1L390 1219 aa16.79■□□□□ 0.28
COLCA1-204ENST00000540738 CCDC8Q9H0W5 538 aaPredicted RBP16.79■□□□□ 0.28
COLCA1-204ENST00000540738 BMP2KQ9NSY1 1161 aaPredicted RBP16.79■□□□□ 0.28
COLCA1-204ENST00000540738 EHMT1Q9H9B1 1298 aa16.79■□□□□ 0.28
COLCA1-204ENST00000540738 OFD1O75665 1012 aa16.79■□□□□ 0.28
COLCA1-204ENST00000540738 EFCAB6Q5THR3 1501 aa16.79■□□□□ 0.28
COLCA1-204ENST00000540738 POLR3AO14802 1390 aaPredicted RBP16.79■□□□□ 0.28
COLCA1-204ENST00000540738 KINO60870 393 aaKnown RBP16.78■□□□□ 0.28
COLCA1-204ENST00000540738 LMOD1P29536 600 aaPredicted RBP16.78■□□□□ 0.28
COLCA1-204ENST00000540738 CCDC96Q2M329 555 aa16.78■□□□□ 0.28
COLCA1-204ENST00000540738 CCDC184Q52MB2 194 aa16.78■□□□□ 0.28
COLCA1-204ENST00000540738 PDRG1Q9NUG6 133 aa16.78■□□□□ 0.28
COLCA1-204ENST00000540738 KDM5DQ9BY66 1539 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms