RNA–Protein interactions for RNA: ENST00000533820.5

CAPN1-226, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-226ENST00000533820 SBNO1A3KN83 1393 aa23.38■■□□□ 1.33
CAPN1-226ENST00000533820 USP31Q70CQ4 1352 aa23.38■■□□□ 1.33
CAPN1-226ENST00000533820 PTMAP06454 111 aaKnown RBP23.38■■□□□ 1.33
CAPN1-226ENST00000533820 RBM33Q96EV2 1170 aaKnown RBP23.38■■□□□ 1.33
CAPN1-226ENST00000533820 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.38■■□□□ 1.33
CAPN1-226ENST00000533820 AGLP35573 1532 aa23.38■■□□□ 1.33
CAPN1-226ENST00000533820 VGLL3A8MV65 326 aa23.37■■□□□ 1.33
CAPN1-226ENST00000533820 OFD1O75665 1012 aa23.37■■□□□ 1.33
CAPN1-226ENST00000533820 NBPF7P0C2Y1 421 aaPredicted RBP23.37■■□□□ 1.33
CAPN1-226ENST00000533820 MCM2P49736 904 aa23.37■■□□□ 1.33
CAPN1-226ENST00000533820 CUL4AQ13619 759 aa23.37■■□□□ 1.33
CAPN1-226ENST00000533820 CWC27Q6UX04 472 aaKnown RBP23.37■■□□□ 1.33
CAPN1-226ENST00000533820 TAF7Q15545 349 aaPredicted RBP23.36■■□□□ 1.33
CAPN1-226ENST00000533820 USP48Q86UV5 1035 aa23.36■■□□□ 1.33
CAPN1-226ENST00000533820 SMAP1Q8IYB5 467 aaPredicted RBP23.36■■□□□ 1.33
CAPN1-226ENST00000533820 ABTB2Q8N961 1025 aa23.36■■□□□ 1.33
CAPN1-226ENST00000533820 MBD3O95983 291 aa23.36■■□□□ 1.33
CAPN1-226ENST00000533820 OS9Q13438 667 aaPredicted RBP23.35■■□□□ 1.33
CAPN1-226ENST00000533820 PDLIM2Q96JY6 352 aa23.35■■□□□ 1.33
CAPN1-226ENST00000533820 HOXC9P31274 260 aa23.35■■□□□ 1.33
CAPN1-226ENST00000533820 NOL7Q9UMY1 257 aaKnown RBP23.35■■□□□ 1.33
CAPN1-226ENST00000533820 PTPRUQ92729 1446 aa23.34■■□□□ 1.33
CAPN1-226ENST00000533820 SOS1Q07889 1333 aaPredicted RBP23.34■■□□□ 1.33
CAPN1-226ENST00000533820 RHPN1Q8TCX5 695 aa23.34■■□□□ 1.33
CAPN1-226ENST00000533820 KCNQ3O43525 872 aa23.34■■□□□ 1.33
CAPN1-226ENST00000533820 RASEFQ8IZ41 740 aa23.34■■□□□ 1.33
CAPN1-226ENST00000533820 STAP2Q9UGK3 403 aa23.34■■□□□ 1.33
CAPN1-226ENST00000533820 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.33■■□□□ 1.33
CAPN1-226ENST00000533820 SRCIN1Q9C0H9 1055 aa23.33■■□□□ 1.33
CAPN1-226ENST00000533820 TSPY26PQ9H489 355 aa23.33■■□□□ 1.33
CAPN1-226ENST00000533820 EID1Q9Y6B2 187 aa23.33■■□□□ 1.33
CAPN1-226ENST00000533820 LGR6Q9HBX8 967 aa23.33■■□□□ 1.32
CAPN1-226ENST00000533820 CNPY2Q9Y2B0 182 aa23.33■■□□□ 1.32
CAPN1-226ENST00000533820 KDRP35968 1356 aa23.33■■□□□ 1.32
CAPN1-226ENST00000533820 CHPF2Q9P2E5 772 aa23.32■■□□□ 1.32
CAPN1-226ENST00000533820 DIP2BQ9P265 1576 aa23.32■■□□□ 1.32
CAPN1-226ENST00000533820 TTC21AQ8NDW8 1320 aa23.32■■□□□ 1.32
CAPN1-226ENST00000533820 SETD1BQ9UPS6 1966 aaKnown RBP23.32■■□□□ 1.32
CAPN1-226ENST00000533820 PI4KAP2A4QPH2 592 aa23.32■■□□□ 1.32
CAPN1-226ENST00000533820 ANAPC15P60006 121 aa23.32■■□□□ 1.32
CAPN1-226ENST00000533820 PI4KAP1Q8N8J0 262 aa23.32■■□□□ 1.32
CAPN1-226ENST00000533820 PLCB2Q00722 1185 aa23.31■■□□□ 1.32
CAPN1-226ENST00000533820 ZNF830Q96NB3 372 aaPredicted RBP23.31■■□□□ 1.32
CAPN1-226ENST00000533820 SSH3Q8TE77 659 aa23.31■■□□□ 1.32
CAPN1-226ENST00000533820 HSPA4P34932 840 aa23.3■■□□□ 1.32
CAPN1-226ENST00000533820 INTS4Q96HW7 963 aaKnown RBP23.3■■□□□ 1.32
CAPN1-226ENST00000533820 ZKSCAN5Q9Y2L8 839 aa23.3■■□□□ 1.32
CAPN1-226ENST00000533820 SNX14Q9Y5W7 946 aa23.3■■□□□ 1.32
CAPN1-226ENST00000533820 MAP3K5Q99683 1374 aa23.3■■□□□ 1.32
CAPN1-226ENST00000533820 FIBPO43427 364 aa23.29■■□□□ 1.32
CAPN1-226ENST00000533820 RGPD1P0DJD0 1748 aa23.29■■□□□ 1.32
CAPN1-226ENST00000533820 AK2P54819 239 aa23.29■■□□□ 1.32
CAPN1-226ENST00000533820 PI4K2BQ8TCG2 481 aa23.29■■□□□ 1.32
CAPN1-226ENST00000533820 SSH2Q76I76 1423 aa23.28■■□□□ 1.32
CAPN1-226ENST00000533820 TCHHQ07283 1943 aa23.28■■□□□ 1.32
CAPN1-226ENST00000533820 WDR33Q9C0J8 1336 aaKnown RBP23.28■■□□□ 1.32
CAPN1-226ENST00000533820 SGSM2O43147 1006 aa23.27■■□□□ 1.32
CAPN1-226ENST00000533820 CASTP20810 708 aaKnown RBP23.27■■□□□ 1.32
CAPN1-226ENST00000533820 SYAP1Q96A49 352 aaPredicted RBP23.27■■□□□ 1.31
CAPN1-226ENST00000533820 USP25Q9UHP3 1055 aa23.27■■□□□ 1.31
CAPN1-226ENST00000533820 PA2G4Q9UQ80 394 aaKnown RBP23.27■■□□□ 1.31
CAPN1-226ENST00000533820 LARGE1O95461 756 aa23.26■■□□□ 1.31
CAPN1-226ENST00000533820 CCDC39Q9UFE4 941 aa23.26■■□□□ 1.31
CAPN1-226ENST00000533820 HS1BP3Q53T59 392 aa23.25■■□□□ 1.31
CAPN1-226ENST00000533820 RUFY3Q7L099 469 aa23.25■■□□□ 1.31
CAPN1-226ENST00000533820 KIF1BPQ96EK5 621 aa23.25■■□□□ 1.31
CAPN1-226ENST00000533820 HTATSF1O43719 755 aaKnown RBP23.25■■□□□ 1.31
CAPN1-226ENST00000533820 MPRIPQ6WCQ1 1025 aa23.25■■□□□ 1.31
CAPN1-226ENST00000533820 CCDC83Q8IWF9 413 aa23.25■■□□□ 1.31
CAPN1-226ENST00000533820 CNTROBQ8N137 903 aa23.25■■□□□ 1.31
CAPN1-226ENST00000533820 CHMP3Q9Y3E7 222 aa23.25■■□□□ 1.31
CAPN1-226ENST00000533820 UQCRHLA0A096LP55 91 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 UQCRHP07919 91 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 MAP7D2Q96T17 732 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 RAD50Q92878 1312 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 HCLS1P14317 486 aaPredicted RBP23.24■■□□□ 1.31
CAPN1-226ENST00000533820 SYT1P21579 422 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 IPO4Q8TEX9 1081 aaKnown RBP23.24■■□□□ 1.31
CAPN1-226ENST00000533820 DNAAF4Q8WXU2 420 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 DIAPH3Q9NSV4 1193 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 ZNF500O60304 480 aaPredicted RBP23.24■■□□□ 1.31
CAPN1-226ENST00000533820 PPP4R3BQ5MIZ7 849 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 LSG1Q9H089 658 aaKnown RBP23.24■■□□□ 1.31
CAPN1-226ENST00000533820 SMC3Q9UQE7 1217 aa23.24■■□□□ 1.31
CAPN1-226ENST00000533820 RGPD8O14715 1765 aaPredicted RBP23.23■■□□□ 1.31
CAPN1-226ENST00000533820 PLEKHG1Q9ULL1 1385 aa23.23■■□□□ 1.31
CAPN1-226ENST00000533820 PRPF40BQ6NWY9 871 aaKnown RBP23.23■■□□□ 1.31
CAPN1-226ENST00000533820 LRRC59Q96AG4 307 aaKnown RBP23.23■■□□□ 1.31
CAPN1-226ENST00000533820 KCNA6P17658 529 aa23.23■■□□□ 1.31
CAPN1-226ENST00000533820 PTH1RQ03431 593 aa23.23■■□□□ 1.31
CAPN1-226ENST00000533820 ADCK5Q3MIX3 580 aa23.23■■□□□ 1.31
CAPN1-226ENST00000533820 DNTTIP2Q5QJE6 756 aaKnown RBP23.23■■□□□ 1.31
CAPN1-226ENST00000533820 C17orf53Q8N3J3 647 aaPredicted RBP23.23■■□□□ 1.31
CAPN1-226ENST00000533820 NBPF6Q5VWK0 638 aa23.22■■□□□ 1.31
CAPN1-226ENST00000533820 NBPF4Q96M43 638 aa23.22■■□□□ 1.31
CAPN1-226ENST00000533820 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.22■■□□□ 1.312e-6■□□□□ 9.3
CAPN1-226ENST00000533820 RPAP1Q9BWH6 1393 aaPredicted RBP23.22■■□□□ 1.31
CAPN1-226ENST00000533820 RAB11FIP3O75154 756 aa23.22■■□□□ 1.31
CAPN1-226ENST00000533820 JAKMIP1Q96N16 626 aaKnown RBP23.22■■□□□ 1.31
CAPN1-226ENST00000533820 STX6O43752 255 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms