RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 EPB41L2O43491 1005 aaKnown RBP13.48□□□□□ -0.25
HDAC9-228ENST00000524023 INTS4Q96HW7 963 aaKnown RBP13.48□□□□□ -0.25
HDAC9-228ENST00000524023 CHD2O14647 1828 aaKnown RBP13.47□□□□□ -0.25
HDAC9-228ENST00000524023 BRD1O95696 1058 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 RHPN1Q8TCX5 695 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 IL25Q9H293 177 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 RGPD2P0DJD1 1756 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 SRGAP3O43295 1099 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 NBPF7P0C2Y1 421 aaPredicted RBP13.47□□□□□ -0.25
HDAC9-228ENST00000524023 BEND3Q5T5X7 828 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 PI4K2BQ8TCG2 481 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 DNAAF4Q8WXU2 420 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 CHAMP1Q96JM3 812 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 CHPF2Q9P2E5 772 aa13.47□□□□□ -0.25
HDAC9-228ENST00000524023 LMO7Q8WWI1 1683 aa13.46□□□□□ -0.25
HDAC9-228ENST00000524023 ANP32BQ92688 251 aaKnown RBP13.46□□□□□ -0.25
HDAC9-228ENST00000524023 KIF1BPQ96EK5 621 aa13.46□□□□□ -0.25
HDAC9-228ENST00000524023 CHMP4AQ9BY43 222 aa13.46□□□□□ -0.25
HDAC9-228ENST00000524023 PI4KAP2A4QPH2 592 aa13.45□□□□□ -0.26
HDAC9-228ENST00000524023 KCNQ3O43525 872 aa13.45□□□□□ -0.26
HDAC9-228ENST00000524023 HSPA4P34932 840 aa13.45□□□□□ -0.26
HDAC9-228ENST00000524023 FOXD4L5Q5VV16 416 aaPredicted RBP13.45□□□□□ -0.26
HDAC9-228ENST00000524023 PI4KAP1Q8N8J0 262 aa13.45□□□□□ -0.26
HDAC9-228ENST00000524023 FOXD4L4Q8WXT5 416 aaPredicted RBP13.45□□□□□ -0.26
HDAC9-228ENST00000524023 PHRF1Q9P1Y6 1649 aaKnown RBP13.45□□□□□ -0.26
HDAC9-228ENST00000524023 NOL8Q76FK4 1167 aaKnown RBP13.45□□□□□ -0.26
HDAC9-228ENST00000524023 UPF3BQ9BZI7 483 aaKnown RBP13.45□□□□□ -0.26
HDAC9-228ENST00000524023 RBM27Q9P2N5 1060 aaKnown RBP13.45□□□□□ -0.26
HDAC9-228ENST00000524023 MAP4K4O95819 1239 aaPredicted RBP13.44□□□□□ -0.26
HDAC9-228ENST00000524023 AKAP4Q5JQC9 854 aa13.44□□□□□ -0.26
HDAC9-228ENST00000524023 BTBD11A6QL63 1104 aa13.44□□□□□ -0.26
HDAC9-228ENST00000524023 PRIM1P49642 420 aaKnown RBP13.44□□□□□ -0.26
HDAC9-228ENST00000524023 TEFQ10587 303 aa13.44□□□□□ -0.26
HDAC9-228ENST00000524023 ZNF530Q6P9A1 599 aaPredicted RBP13.44□□□□□ -0.26
HDAC9-228ENST00000524023 KCNH5Q8NCM2 988 aa13.44□□□□□ -0.26
HDAC9-228ENST00000524023 RBSNQ9H1K0 784 aa13.44□□□□□ -0.26
HDAC9-228ENST00000524023 TMEM63CQ9P1W3 806 aa13.44□□□□□ -0.26
HDAC9-228ENST00000524023 ADCY9O60503 1353 aa13.43□□□□□ -0.26
HDAC9-228ENST00000524023 SGSM2O43147 1006 aa13.43□□□□□ -0.26
HDAC9-228ENST00000524023 ANXA1P04083 346 aa13.43□□□□□ -0.26
HDAC9-228ENST00000524023 PSME1Q06323 249 aa13.43□□□□□ -0.26
HDAC9-228ENST00000524023 LRRC59Q96AG4 307 aaKnown RBP13.43□□□□□ -0.26
HDAC9-228ENST00000524023 NAP1L5Q96NT1 182 aaPredicted RBP13.43□□□□□ -0.26
HDAC9-228ENST00000524023 NSFL1CQ9UNZ2 370 aaKnown RBP13.43□□□□□ -0.26
HDAC9-228ENST00000524023 RAD50Q92878 1312 aa13.43□□□□□ -0.26
HDAC9-228ENST00000524023 ZBTB7CA1YPR0 619 aa13.42□□□□□ -0.26
HDAC9-228ENST00000524023 MBD3O95983 291 aa13.42□□□□□ -0.26
HDAC9-228ENST00000524023 PLEKHO1Q53GL0 409 aaPredicted RBP13.42□□□□□ -0.26
HDAC9-228ENST00000524023 HSP90AB4PQ58FF6 505 aa13.42□□□□□ -0.26
HDAC9-228ENST00000524023 CNTROBQ8N137 903 aa13.42□□□□□ -0.26
HDAC9-228ENST00000524023 RBM33Q96EV2 1170 aaKnown RBP13.42□□□□□ -0.26
HDAC9-228ENST00000524023 CRYBG1Q9Y4K1 1723 aa13.42□□□□□ -0.26
HDAC9-228ENST00000524023 ADGRL3Q9HAR2 1447 aa13.42□□□□□ -0.26
HDAC9-228ENST00000524023 MPRIPQ6WCQ1 1025 aa13.42□□□□□ -0.26
HDAC9-228ENST00000524023 USP42Q9H9J4 1324 aaKnown RBP13.41□□□□□ -0.26
HDAC9-228ENST00000524023 ESCO1Q5FWF5 840 aa13.41□□□□□ -0.26
HDAC9-228ENST00000524023 LRSAM1Q6UWE0 723 aa13.41□□□□□ -0.26
HDAC9-228ENST00000524023 LSG1Q9H089 658 aaKnown RBP13.41□□□□□ -0.26
HDAC9-228ENST00000524023 PLEKHG5O94827 1062 aa13.41□□□□□ -0.26
HDAC9-228ENST00000524023 MTX1Q13505 466 aa13.41□□□□□ -0.26
HDAC9-228ENST00000524023 AMOTQ4VCS5 1084 aa13.41□□□□□ -0.26
HDAC9-228ENST00000524023 DBF4Q9UBU7 674 aaPredicted RBP13.41□□□□□ -0.26
HDAC9-228ENST00000524023 SNX14Q9Y5W7 946 aa13.41□□□□□ -0.26
HDAC9-228ENST00000524023 TTC41PQ6P2S7 1318 aa13.4□□□□□ -0.26
HDAC9-228ENST00000524023 RNMTO43148 476 aaKnown RBP13.4□□□□□ -0.26
HDAC9-228ENST00000524023 ANKLE2Q86XL3 938 aa13.4□□□□□ -0.26
HDAC9-228ENST00000524023 NCAPD2Q15021 1401 aa13.4□□□□□ -0.26
HDAC9-228ENST00000524023 SYCE3A1L190 88 aa13.39□□□□□ -0.27
HDAC9-228ENST00000524023 ZSCAN30Q86W11 494 aa13.39□□□□□ -0.27
HDAC9-228ENST00000524023 PDLIM2Q96JY6 352 aa13.39□□□□□ -0.27
HDAC9-228ENST00000524023 PXDNQ92626 1479 aa13.39□□□□□ -0.27
HDAC9-228ENST00000524023 ALDH1L1O75891 902 aa13.39□□□□□ -0.27
HDAC9-228ENST00000524023 GLRX3O76003 335 aaKnown RBP13.39□□□□□ -0.27
HDAC9-228ENST00000524023 OS9Q13438 667 aaPredicted RBP13.39□□□□□ -0.27
HDAC9-228ENST00000524023 TTC14Q96N46 770 aa13.39□□□□□ -0.27
HDAC9-228ENST00000524023 WDR33Q9C0J8 1336 aaKnown RBP13.39□□□□□ -0.27
HDAC9-228ENST00000524023 OVOS2A0A0G2JMS6 1433 aa13.39□□□□□ -0.27
HDAC9-228ENST00000524023 TCHHQ07283 1943 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 GIGYF1O75420 1035 aaPredicted RBP13.38□□□□□ -0.27
HDAC9-228ENST00000524023 C1orf141Q5JVX7 400 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 CWC27Q6UX04 472 aaKnown RBP13.38□□□□□ -0.27
HDAC9-228ENST00000524023 ARHGEF25Q86VW2 580 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 RASEFQ8IZ41 740 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 MAP3K2Q9Y2U5 619 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 HEG1Q9ULI3 1381 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 GCP02774 474 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 PROSER3Q2NL68 480 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 HS1BP3Q53T59 392 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 KIAA1211Q6ZU35 1233 aa13.38□□□□□ -0.27
HDAC9-228ENST00000524023 C9orf78Q9NZ63 289 aaPredicted RBP13.38□□□□□ -0.27
HDAC9-228ENST00000524023 KSR2Q6VAB6 950 aa13.37□□□□□ -0.27
HDAC9-228ENST00000524023 CLASRPQ8N2M8 674 aaKnown RBP13.37□□□□□ -0.27
HDAC9-228ENST00000524023 SPG7Q9UQ90 795 aa13.37□□□□□ -0.27
HDAC9-228ENST00000524023 SLIT3O75094 1523 aa13.37□□□□□ -0.27
HDAC9-228ENST00000524023 RPAP1Q9BWH6 1393 aaPredicted RBP13.37□□□□□ -0.27
HDAC9-228ENST00000524023 SIPA1L3O60292 1781 aaPredicted RBP13.37□□□□□ -0.27
HDAC9-228ENST00000524023 AK2P54819 239 aa13.36□□□□□ -0.27
HDAC9-228ENST00000524023 ANKRD24Q8TF21 1146 aa13.36□□□□□ -0.27
HDAC9-228ENST00000524023 ECHDC1Q9NTX5 307 aa13.36□□□□□ -0.27
HDAC9-228ENST00000524023 PRAMEF22A3QJZ6 481 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms