RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 CACNA1SQ13698 1873 aa16.02■□□□□ 0.16
SDCBP-211ENST00000523441 GLTPD2A6NH11 291 aa16.02■□□□□ 0.16
SDCBP-211ENST00000523441 INTS5Q6P9B9 1019 aaKnown RBP16.02■□□□□ 0.16
SDCBP-211ENST00000523441 ADAMTS7Q9UKP4 1686 aa16.02■□□□□ 0.15
SDCBP-211ENST00000523441 VIRMAQ69YN4 1812 aaKnown RBP16.01■□□□□ 0.15
SDCBP-211ENST00000523441 SCN11AQ9UI33 1791 aa16.01■□□□□ 0.15
SDCBP-211ENST00000523441 DLEC1Q9Y238 1755 aa16.01■□□□□ 0.15
SDCBP-211ENST00000523441 TM4SF1P30408 202 aa16.01■□□□□ 0.15
SDCBP-211ENST00000523441 C2CD5Q86YS7 1000 aa16.01■□□□□ 0.15
SDCBP-211ENST00000523441 NFIXQ14938 502 aa16■□□□□ 0.15
SDCBP-211ENST00000523441 CCDC24Q8N4L8 307 aa16■□□□□ 0.15
SDCBP-211ENST00000523441 SERPINB2P05120 415 aa15.99■□□□□ 0.15
SDCBP-211ENST00000523441 SLC39A6Q13433 755 aa15.99■□□□□ 0.15
SDCBP-211ENST00000523441 AMOTQ4VCS5 1084 aa15.99■□□□□ 0.15
SDCBP-211ENST00000523441 TTLL6Q8N841 843 aa15.99■□□□□ 0.15
SDCBP-211ENST00000523441 CARMIL3Q8ND23 1372 aa15.99■□□□□ 0.15
SDCBP-211ENST00000523441 SULT6B1Q6IMI4 303 aa15.98■□□□□ 0.15
SDCBP-211ENST00000523441 ZNF622Q969S3 477 aaKnown RBP eCLIP15.98■□□□□ 0.15
SDCBP-211ENST00000523441 H0YIN7 160 aa15.97■□□□□ 0.15
SDCBP-211ENST00000523441 NFKBIEO00221 500 aa15.97■□□□□ 0.15
SDCBP-211ENST00000523441 ZNF330Q9Y3S2 320 aaPredicted RBP15.97■□□□□ 0.15
SDCBP-211ENST00000523441 COL15A1P39059 1388 aa15.97■□□□□ 0.15
SDCBP-211ENST00000523441 SOS1Q07889 1333 aaPredicted RBP15.96■□□□□ 0.15
SDCBP-211ENST00000523441 POTEIP0CG38 1075 aa15.96■□□□□ 0.15
SDCBP-211ENST00000523441 POTEJP0CG39 1038 aa15.96■□□□□ 0.15
SDCBP-211ENST00000523441 CANXP27824 592 aaKnown RBP15.96■□□□□ 0.15
SDCBP-211ENST00000523441 DPY19L2Q6NUT2 758 aa15.96■□□□□ 0.15
SDCBP-211ENST00000523441 ZBTB1Q9Y2K1 713 aa15.96■□□□□ 0.15
SDCBP-211ENST00000523441 ZC3H4Q9UPT8 1303 aaKnown RBP15.95■□□□□ 0.14
SDCBP-211ENST00000523441 NRXN2Q9P2S2 1712 aa15.95■□□□□ 0.14
SDCBP-211ENST00000523441 POTECB2RU33 542 aa15.95■□□□□ 0.14
SDCBP-211ENST00000523441 C21orf2O43822 256 aa15.95■□□□□ 0.14
SDCBP-211ENST00000523441 ERFEQ4G0M1 354 aa15.95■□□□□ 0.14
SDCBP-211ENST00000523441 LGR6Q9HBX8 967 aa15.95■□□□□ 0.14
SDCBP-211ENST00000523441 NARFQ9UHQ1 456 aa15.95■□□□□ 0.14
SDCBP-211ENST00000523441 DICER1Q9UPY3 1922 aaKnown RBP15.95■□□□□ 0.14
SDCBP-211ENST00000523441 ANKRD31Q8N7Z5 1873 aa15.95■□□□□ 0.14
SDCBP-211ENST00000523441 FOXN1O15353 648 aa15.94■□□□□ 0.14
SDCBP-211ENST00000523441 CYP19A1P11511 503 aaPredicted RBP15.94■□□□□ 0.14
SDCBP-211ENST00000523441 CHADLQ6NUI6 762 aa15.93■□□□□ 0.14
SDCBP-211ENST00000523441 MORC1Q86VD1 984 aa15.93■□□□□ 0.14
SDCBP-211ENST00000523441 BCL2L12Q9HB09 334 aa15.93■□□□□ 0.14
SDCBP-211ENST00000523441 COL11A2P13942 1736 aaPredicted RBP15.93■□□□□ 0.14
SDCBP-211ENST00000523441 NPHP1O15259 732 aa15.92■□□□□ 0.14
SDCBP-211ENST00000523441 DDNO94850 711 aaPredicted RBP15.92■□□□□ 0.14
SDCBP-211ENST00000523441 SLC52A2Q9HAB3 445 aa15.92■□□□□ 0.14
SDCBP-211ENST00000523441 FER1L6Q2WGJ9 1857 aa15.92■□□□□ 0.14
SDCBP-211ENST00000523441 HMOX1P09601 288 aa15.91■□□□□ 0.14
SDCBP-211ENST00000523441 PANK3Q9H999 370 aa15.91■□□□□ 0.14
SDCBP-211ENST00000523441 AIDAQ96BJ3 306 aa15.9■□□□□ 0.14
SDCBP-211ENST00000523441 CREBZFQ9NS37 354 aa15.9■□□□□ 0.14
SDCBP-211ENST00000523441 RNMTO43148 476 aaKnown RBP15.89■□□□□ 0.13
SDCBP-211ENST00000523441 EAPPQ56P03 285 aaPredicted RBP15.89■□□□□ 0.13
SDCBP-211ENST00000523441 AKAP4Q5JQC9 854 aa15.89■□□□□ 0.13
SDCBP-211ENST00000523441 TBC1D9BQ66K14 1250 aa15.89■□□□□ 0.13
SDCBP-211ENST00000523441 SLX4Q8IY92 1834 aa15.89■□□□□ 0.13
SDCBP-211ENST00000523441 TBC1D2BQ9UPU7 963 aa15.88■□□□□ 0.13
SDCBP-211ENST00000523441 CLEC11AQ9Y240 323 aa15.88■□□□□ 0.13
SDCBP-211ENST00000523441 TAOK3Q9H2K8 898 aa15.87■□□□□ 0.13
SDCBP-211ENST00000523441 PDE6BP35913 854 aa15.86■□□□□ 0.13
SDCBP-211ENST00000523441 LBX1P52954 281 aa15.86■□□□□ 0.13
SDCBP-211ENST00000523441 CNTNAP1P78357 1384 aa15.86■□□□□ 0.13
SDCBP-211ENST00000523441 IL13P35225 146 aa15.85■□□□□ 0.13
SDCBP-211ENST00000523441 VEGFBP49765 207 aa15.85■□□□□ 0.13
SDCBP-211ENST00000523441 PRR5LQ6MZQ0 368 aa15.85■□□□□ 0.13
SDCBP-211ENST00000523441 TTC5Q8N0Z6 440 aa15.85■□□□□ 0.13
SDCBP-211ENST00000523441 SCN7AQ01118 1682 aa15.85■□□□□ 0.13
SDCBP-211ENST00000523441 CTCFP49711 727 aaPredicted RBP15.84■□□□□ 0.13
SDCBP-211ENST00000523441 CNGB1Q14028 1251 aaPredicted RBP15.84■□□□□ 0.13
SDCBP-211ENST00000523441 BRIP1Q9BX63 1249 aa15.84■□□□□ 0.13
SDCBP-211ENST00000523441 UBR2Q8IWV8 1755 aa15.84■□□□□ 0.13
SDCBP-211ENST00000523441 STARD3NLO95772 234 aa15.83■□□□□ 0.12
SDCBP-211ENST00000523441 GRM1Q13255 1194 aa15.83■□□□□ 0.12
SDCBP-211ENST00000523441 MTHFSDQ2M296 383 aaKnown RBP15.83■□□□□ 0.12
SDCBP-211ENST00000523441 PRPF40BQ6NWY9 871 aaKnown RBP15.83■□□□□ 0.12
SDCBP-211ENST00000523441 MRC1P22897 1456 aa15.83■□□□□ 0.12
SDCBP-211ENST00000523441 A0A087WZG4 1122 aa15.82■□□□□ 0.12
SDCBP-211ENST00000523441 FAM161AQ3B820 660 aa15.82■□□□□ 0.12
SDCBP-211ENST00000523441 NPM2Q86SE8 214 aaKnown RBP15.82■□□□□ 0.12
SDCBP-211ENST00000523441 CNBD1Q8NA66 436 aa15.82■□□□□ 0.12
SDCBP-211ENST00000523441 PRDM10Q9NQV6 1147 aa15.82■□□□□ 0.12
SDCBP-211ENST00000523441 SCN4AP35499 1836 aa15.82■□□□□ 0.12
SDCBP-211ENST00000523441 TMEM88BA6NKF7 163 aa15.81■□□□□ 0.12
SDCBP-211ENST00000523441 PIP4K2AP48426 406 aaPredicted RBP15.81■□□□□ 0.12
SDCBP-211ENST00000523441 EIF5P55010 431 aaKnown RBP15.81■□□□□ 0.12
SDCBP-211ENST00000523441 ST5P78524 1137 aa15.81■□□□□ 0.12
SDCBP-211ENST00000523441 PAXIP1Q6ZW49 1069 aaPredicted RBP15.81■□□□□ 0.12
SDCBP-211ENST00000523441 LDHDQ86WU2 507 aa15.81■□□□□ 0.12
SDCBP-211ENST00000523441 SETDB2Q96T68 719 aa15.81■□□□□ 0.12
SDCBP-211ENST00000523441 TAF1DQ9H5J8 278 aaPredicted RBP15.81■□□□□ 0.12
SDCBP-211ENST00000523441 ARFGEF2Q9Y6D5 1785 aa15.81■□□□□ 0.12
SDCBP-211ENST00000523441 IQCA1LA6NCM1 817 aa15.8■□□□□ 0.12
SDCBP-211ENST00000523441 FAM177BA6PVY3 158 aa15.8■□□□□ 0.12
SDCBP-211ENST00000523441 OLFM4Q6UX06 510 aa15.8■□□□□ 0.12
SDCBP-211ENST00000523441 CNKSR1Q969H4 720 aa15.8■□□□□ 0.12
SDCBP-211ENST00000523441 ZNF496Q96IT1 587 aaPredicted RBP15.8■□□□□ 0.12
SDCBP-211ENST00000523441 ZNF277Q9NRM2 450 aaPredicted RBP15.8■□□□□ 0.12
SDCBP-211ENST00000523441 KNSTRNQ9Y448 316 aa15.8■□□□□ 0.12
SDCBP-211ENST00000523441 PASKQ96RG2 1323 aa15.79■□□□□ 0.12
SDCBP-211ENST00000523441 ZNF541Q9H0D2 1346 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms