RNA–Protein interactions for RNA: ENST00000509599.5

PTPN20-221, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best) BASIC

Gene PTPN20, Length 945 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-221ENST00000509599 NBPF1Q3BBV0 1214 aa13.97□□□□□ -0.17
PTPN20-221ENST00000509599 TIAM2Q8IVF5 1701 aa13.96□□□□□ -0.17
PTPN20-221ENST00000509599 VEGFAP15692 232 aaPredicted RBP13.95□□□□□ -0.18
PTPN20-221ENST00000509599 LBX1P52954 281 aa13.95□□□□□ -0.18
PTPN20-221ENST00000509599 DCAF5Q96JK2 942 aa13.95□□□□□ -0.18
PTPN20-221ENST00000509599 KTN1Q86UP2 1357 aaKnown RBP13.95□□□□□ -0.18
PTPN20-221ENST00000509599 LTV1Q96GA3 475 aaPredicted RBP13.94□□□□□ -0.18
PTPN20-221ENST00000509599 NME9Q86XW9 330 aa13.93□□□□□ -0.18
PTPN20-221ENST00000509599 LINC00116Q8NCU8 138 aa13.93□□□□□ -0.18
PTPN20-221ENST00000509599 KDM6AO15550 1401 aaPredicted RBP13.92□□□□□ -0.18
PTPN20-221ENST00000509599 PDAP1Q13442 181 aaKnown RBP13.92□□□□□ -0.18
PTPN20-221ENST00000509599 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.92□□□□□ -0.18
PTPN20-221ENST00000509599 IP6K1Q92551 441 aa13.92□□□□□ -0.18
PTPN20-221ENST00000509599 AIDAQ96BJ3 306 aa13.92□□□□□ -0.18
PTPN20-221ENST00000509599 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.92□□□□□ -0.18
PTPN20-221ENST00000509599 CNTNAP1P78357 1384 aa13.92□□□□□ -0.18
PTPN20-221ENST00000509599 MPRIPQ6WCQ1 1025 aa13.91□□□□□ -0.18
PTPN20-221ENST00000509599 PDCD7Q8N8D1 485 aaKnown RBP13.91□□□□□ -0.18
PTPN20-221ENST00000509599 EVC2Q86UK5 1308 aa13.9□□□□□ -0.18
PTPN20-221ENST00000509599 ZC3H4Q9UPT8 1303 aaKnown RBP13.9□□□□□ -0.18
PTPN20-221ENST00000509599 GLTPD2A6NH11 291 aa13.9□□□□□ -0.18
PTPN20-221ENST00000509599 CCDC85CA6NKD9 419 aa13.9□□□□□ -0.18
PTPN20-221ENST00000509599 POTECB2RU33 542 aa13.9□□□□□ -0.18
PTPN20-221ENST00000509599 WBP1LQ9NX94 342 aa13.9□□□□□ -0.18
PTPN20-221ENST00000509599 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.9□□□□□ -0.18
PTPN20-221ENST00000509599 PIM2Q9P1W9 311 aa13.9□□□□□ -0.18
PTPN20-221ENST00000509599 SBNO2Q9Y2G9 1366 aa13.89□□□□□ -0.19
PTPN20-221ENST00000509599 GNPATO15228 680 aa13.89□□□□□ -0.19
PTPN20-221ENST00000509599 DALRD3Q5D0E6 543 aaKnown RBP13.89□□□□□ -0.19
PTPN20-221ENST00000509599 SMARCC1Q92922 1105 aaPredicted RBP13.89□□□□□ -0.19
PTPN20-221ENST00000509599 CCDC87Q9NVE4 849 aa13.89□□□□□ -0.19
PTPN20-221ENST00000509599 ST18O60284 1047 aa13.88□□□□□ -0.19
PTPN20-221ENST00000509599 HSPA8P11142 646 aaKnown RBP13.88□□□□□ -0.19
PTPN20-221ENST00000509599 RASSF7Q02833 373 aa13.88□□□□□ -0.19
PTPN20-221ENST00000509599 DICER1Q9UPY3 1922 aaKnown RBP13.88□□□□□ -0.19
PTPN20-221ENST00000509599 CD163L1Q9NR16 1453 aa13.87□□□□□ -0.19
PTPN20-221ENST00000509599 NLGN1Q8N2Q7 840 aa13.87□□□□□ -0.19
PTPN20-221ENST00000509599 LOC102724428A0A0B4J2F2 783 aa13.86□□□□□ -0.19
PTPN20-221ENST00000509599 VEGFBP49765 207 aa13.86□□□□□ -0.19
PTPN20-221ENST00000509599 SIK1P57059 783 aa13.86□□□□□ -0.19
PTPN20-221ENST00000509599 TMF1P82094 1093 aa13.86□□□□□ -0.19
PTPN20-221ENST00000509599 ITPK1Q13572 414 aa13.86□□□□□ -0.19
PTPN20-221ENST00000509599 C3orf67Q6ZVT6 689 aa13.86□□□□□ -0.19
PTPN20-221ENST00000509599 MYH14Q7Z406 1995 aaKnown RBP13.85□□□□□ -0.19
PTPN20-221ENST00000509599 PIGBQ92521 554 aa13.84□□□□□ -0.19
PTPN20-221ENST00000509599 L3MBTL3Q96JM7 780 aaPredicted RBP13.84□□□□□ -0.19
PTPN20-221ENST00000509599 CGNL1Q0VF96 1302 aa13.84□□□□□ -0.19
PTPN20-221ENST00000509599 COL5A3P25940 1745 aaPredicted RBP13.84□□□□□ -0.19
PTPN20-221ENST00000509599 DLEC1Q9Y238 1755 aa13.83□□□□□ -0.19
PTPN20-221ENST00000509599 GYS1P13807 737 aa13.83□□□□□ -0.2
PTPN20-221ENST00000509599 LMNB1P20700 586 aa13.83□□□□□ -0.2
PTPN20-221ENST00000509599 CHRNA5P30532 468 aa13.83□□□□□ -0.2
PTPN20-221ENST00000509599 HOXC9P31274 260 aa13.83□□□□□ -0.2
PTPN20-221ENST00000509599 PARP3Q9Y6F1 533 aa13.83□□□□□ -0.2
PTPN20-221ENST00000509599 PCDH11XQ9BZA7 1347 aa13.83□□□□□ -0.2
PTPN20-221ENST00000509599 PCDH11YQ9BZA8 1340 aa13.83□□□□□ -0.2
PTPN20-221ENST00000509599 CYP27B1O15528 508 aa13.82□□□□□ -0.2
PTPN20-221ENST00000509599 NBPF6Q5VWK0 638 aa13.82□□□□□ -0.2
PTPN20-221ENST00000509599 USHBP1Q8N6Y0 703 aa13.82□□□□□ -0.2
PTPN20-221ENST00000509599 NBPF4Q96M43 638 aa13.82□□□□□ -0.2
PTPN20-221ENST00000509599 TRAPPC3LQ5T215 181 aa13.81□□□□□ -0.2
PTPN20-221ENST00000509599 MAP3K19Q56UN5 1328 aa13.81□□□□□ -0.2
PTPN20-221ENST00000509599 PASKQ96RG2 1323 aa13.81□□□□□ -0.2
PTPN20-221ENST00000509599 CASP8AP2Q9UKL3 1982 aa13.8□□□□□ -0.2
PTPN20-221ENST00000509599 ZNF831Q5JPB2 1677 aa13.8□□□□□ -0.2
PTPN20-221ENST00000509599 ATP6V1AP38606 617 aa13.8□□□□□ -0.2
PTPN20-221ENST00000509599 RAPGEF4Q8WZA2 1011 aa13.8□□□□□ -0.2
PTPN20-221ENST00000509599 ARHGEF1Q92888 912 aaKnown RBP13.8□□□□□ -0.2
PTPN20-221ENST00000509599 AFDNP55196 1824 aaKnown RBP13.8□□□□□ -0.2
PTPN20-221ENST00000509599 SNPHO15079 494 aa13.79□□□□□ -0.2
PTPN20-221ENST00000509599 FBLN1P23142 703 aa13.79□□□□□ -0.2
PTPN20-221ENST00000509599 CDAN1Q8IWY9 1227 aa13.79□□□□□ -0.2
PTPN20-221ENST00000509599 RTCBQ9Y3I0 505 aaKnown RBP13.79□□□□□ -0.2
PTPN20-221ENST00000509599 EDC4Q6P2E9 1401 aaKnown RBP13.79□□□□□ -0.2
PTPN20-221ENST00000509599 THSD7BQ9C0I4 1608 aa13.79□□□□□ -0.2
PTPN20-221ENST00000509599 TATP17735 454 aaPredicted RBP13.78□□□□□ -0.2
PTPN20-221ENST00000509599 ASAP1Q9ULH1 1129 aa13.78□□□□□ -0.2
PTPN20-221ENST00000509599 FER1L6Q2WGJ9 1857 aa13.78□□□□□ -0.2
PTPN20-221ENST00000509599 DDR1Q08345 913 aa13.77□□□□□ -0.21
PTPN20-221ENST00000509599 RAB3GAP2Q9H2M9 1393 aa13.77□□□□□ -0.21
PTPN20-221ENST00000509599 SCN4AP35499 1836 aa13.76□□□□□ -0.21
PTPN20-221ENST00000509599 KDRP35968 1356 aa13.76□□□□□ -0.21
PTPN20-221ENST00000509599 TMEM88BA6NKF7 163 aa13.76□□□□□ -0.21
PTPN20-221ENST00000509599 AMPHP49418 695 aa13.76□□□□□ -0.21
PTPN20-221ENST00000509599 CFAP44Q96MT7 982 aa13.76□□□□□ -0.21
PTPN20-221ENST00000509599 NFKBIEO00221 500 aa13.75□□□□□ -0.21
PTPN20-221ENST00000509599 RFC4P35249 363 aa13.75□□□□□ -0.21
PTPN20-221ENST00000509599 MAP2K1Q02750 393 aaPredicted RBP13.75□□□□□ -0.21
PTPN20-221ENST00000509599 DPY19L2Q6NUT2 758 aa13.75□□□□□ -0.21
PTPN20-221ENST00000509599 RASSF10A6NK89 507 aa13.74□□□□□ -0.21
PTPN20-221ENST00000509599 NKX1-1Q15270 411 aaPredicted RBP13.74□□□□□ -0.21
PTPN20-221ENST00000509599 SLC4A9Q96Q91 983 aa13.74□□□□□ -0.21
PTPN20-221ENST00000509599 LTBP1Q14766 1721 aa13.73□□□□□ -0.21
PTPN20-221ENST00000509599 ADAMTS7Q9UKP4 1686 aa13.73□□□□□ -0.21
PTPN20-221ENST00000509599 WDR33Q9C0J8 1336 aaKnown RBP13.73□□□□□ -0.21
PTPN20-221ENST00000509599 ITGBL1O95965 494 aaPredicted RBP13.73□□□□□ -0.21
PTPN20-221ENST00000509599 TMEM121BQ9BXQ6 578 aaPredicted RBP13.73□□□□□ -0.21
PTPN20-221ENST00000509599 ATG3Q9NT62 314 aa13.73□□□□□ -0.21
PTPN20-221ENST00000509599 ADAMTSL1Q8N6G6 1762 aa13.73□□□□□ -0.21
PTPN20-221ENST00000509599 NRXN2Q9P2S2 1712 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms