RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 SMYD5Q6GMV2 418 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 KIAA1211Q6ZU35 1233 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 CCDC34Q96HJ3 373 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 TOMM22Q9NS69 142 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 PIM2Q9P1W9 311 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 NIP7Q9Y221 180 aaKnown RBP eCLIP3.64□□□□□ -1.83
NEDD4-208ENST00000508342 KNDC1Q76NI1 1749 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 ANKARQ7Z5J8 1434 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 SBNO1A3KN83 1393 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 GOLGA6L6A8MZA4 724 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 H7C1D1 291 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 BRPF1P55201 1214 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-208ENST00000508342 RASSF8Q8NHQ8 419 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 HOXC9P31274 260 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 MKRN4PQ13434 485 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-208ENST00000508342 SPINK5Q9NQ38 1064 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-208ENST00000508342 TRMT112Q9UI30 125 aaKnown RBP3.63□□□□□ -1.83
NEDD4-208ENST00000508342 R3HCC1Q9Y3T6 440 aaKnown RBP3.63□□□□□ -1.83
NEDD4-208ENST00000508342 TULP4Q9NRJ4 1543 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 C1orf167Q5SNV9 1468 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 CCDC85CA6NKD9 419 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 VTI1AQ96AJ9 217 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 NCOA3Q9Y6Q9 1424 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 PNPLA6Q8IY17 1366 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 TOPAZ1Q8N9V7 1692 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 WASHC4Q2M389 1173 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 LARGE2Q8N3Y3 721 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 PAF1Q8N7H5 531 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 IP6K1Q92551 441 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 UTP14AQ9BVJ6 771 aaKnown RBP3.63□□□□□ -1.83
NEDD4-208ENST00000508342 MBD5Q9P267 1494 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 ATP2B2Q01814 1243 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 ARHGEF6Q15052 776 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 SLIT1O75093 1534 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 SPATA31A1Q5TZJ5 1347 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 DCCP43146 1447 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 BECN1Q14457 450 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 OGFOD1Q8N543 542 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 SPATA31A5Q5VU36 1347 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 SPATA31A7Q8IWB4 1347 aa3.63□□□□□ -1.83
NEDD4-208ENST00000508342 IPO8O15397 1037 aaKnown RBP3.62□□□□□ -1.83
NEDD4-208ENST00000508342 CCDC57Q2TAC2 916 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 SMC4Q9NTJ3 1288 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 BLMP54132 1417 aaPredicted RBP3.62□□□□□ -1.83
NEDD4-208ENST00000508342 CAVIN4Q5BKX8 364 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 EYA3Q99504 573 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 VEZTQ9HBM0 779 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 LTBP4Q8N2S1 1624 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 ELL2O00472 640 aaPredicted RBP3.62□□□□□ -1.83
NEDD4-208ENST00000508342 WDR78Q5VTH9 848 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 TPTE2Q6XPS3 522 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 ITPRIPQ8IWB1 547 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 NWD2Q9ULI1 1742 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 USP32Q8NFA0 1604 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 FAM135BQ49AJ0 1406 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 AK9Q5TCS8 1911 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 PTMAP06454 111 aaKnown RBP3.62□□□□□ -1.83
NEDD4-208ENST00000508342 ERFEQ4G0M1 354 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 WWC2Q6AWC2 1192 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 CARD10Q9BWT7 1032 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 LMTK2Q8IWU2 1503 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 MCCP23508 829 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 MYD88Q99836 296 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 IGSF1Q8N6C5 1336 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 NEXMIFQ5QGS0 1516 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 TNNI2P48788 182 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 FKBP5Q13451 457 aaPredicted RBP3.62□□□□□ -1.83
NEDD4-208ENST00000508342 CCDC152Q4G0S7 254 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 CCDC43Q96MW1 224 aaKnown RBP3.62□□□□□ -1.83
NEDD4-208ENST00000508342 CCDC85AQ96PX6 553 aaPredicted RBP3.62□□□□□ -1.83
NEDD4-208ENST00000508342 ARHGAP31Q2M1Z3 1444 aa3.62□□□□□ -1.83
NEDD4-208ENST00000508342 EDC4Q6P2E9 1401 aaKnown RBP3.61□□□□□ -1.83
NEDD4-208ENST00000508342 PPIP5K2O43314 1243 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 PRKAR2BP31323 418 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 CHMP4BP1P59074 171 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 PROM2Q8N271 834 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 F8W031 263 aaPredicted RBP3.61□□□□□ -1.83
NEDD4-208ENST00000508342 STK25O00506 426 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 DHX16O60231 1041 aaKnown RBP3.61□□□□□ -1.83
NEDD4-208ENST00000508342 ZNF804AQ7Z570 1209 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 MTFR1LQ9H019 292 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 NEURL4Q96JN8 1562 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 RGPD5Q99666 1765 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 TECPR2O15040 1411 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 PPEF1O14829 653 aaPredicted RBP3.61□□□□□ -1.83
NEDD4-208ENST00000508342 TICAM2Q86XR7 235 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 NOC3LQ8WTT2 800 aaKnown RBP3.61□□□□□ -1.83
NEDD4-208ENST00000508342 APPP05067 770 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 KCNQ4P56696 695 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 PRKG1Q13976 671 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 AKAP4Q5JQC9 854 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 DPP8Q6V1X1 898 aaPredicted RBP3.61□□□□□ -1.83
NEDD4-208ENST00000508342 SLF2Q8IX21 1173 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 CRACR2BQ8N4Y2 399 aaPredicted RBP3.61□□□□□ -1.83
NEDD4-208ENST00000508342 NEUROD6Q96NK8 337 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 SETBP1Q9Y6X0 1596 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 OTUD7BQ6GQQ9 843 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 NLGN1Q8N2Q7 840 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 C2orf69Q8N8R5 385 aa3.61□□□□□ -1.83
NEDD4-208ENST00000508342 TMEM87AQ8NBN3 555 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms