RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 DYDC1Q8WWB3 177 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 ACSBG1Q96GR2 724 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 NBPF4Q96M43 638 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 NUP62CLQ9H1M0 184 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 SSX2IPQ9Y2D8 614 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 ZNF213O14771 459 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 ARHGAP29Q52LW3 1261 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 CCDC61Q9Y6R9 512 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 C8orf37Q96NL8 207 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 BAG3O95817 575 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 LDHCP07864 332 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 NF2P35240 595 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 SSRP1Q08945 709 aaKnown RBP15.26■□□□□ 0.03
COL6A3-212ENST00000491769 RBM26Q5T8P6 1007 aaKnown RBP15.26■□□□□ 0.03
COL6A3-212ENST00000491769 KRT28Q7Z3Y7 464 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 LRPPRCP42704 1394 aaKnown RBP15.26■□□□□ 0.03
COL6A3-212ENST00000491769 ANKRD30BQ9BXX2 1392 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 GRIN2BQ13224 1484 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 IFIT3O14879 490 aaKnown RBP15.26■□□□□ 0.03
COL6A3-212ENST00000491769 CCDC8Q9H0W5 538 aaPredicted RBP15.26■□□□□ 0.03
COL6A3-212ENST00000491769 NFE2L2Q16236 605 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 PPP1R42Q7Z4L9 355 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 GUCY1B3Q02153 619 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 PRPF40BQ6NWY9 871 aaKnown RBP15.25■□□□□ 0.03
COL6A3-212ENST00000491769 CCDC148Q8NFR7 591 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 KIF1BPQ96EK5 621 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 RNF41Q9H4P4 317 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-212ENST00000491769 PODXL2Q9NZ53 605 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 K7ELQ4 463 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-212ENST00000491769 PLS1Q14651 629 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 NCOA2Q15596 1464 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 CEBPAP49715 358 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-212ENST00000491769 FILIP1Q7Z7B0 1213 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 GOLGA8AA7E2F4 631 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 GOLGA8BA8MQT2 603 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 TCERG1LQ5VWI1 586 aa15.25■□□□□ 0.03
COL6A3-212ENST00000491769 IGF1RP08069 1367 aa15.24■□□□□ 0.03
COL6A3-212ENST00000491769 TAF7Q15545 349 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-212ENST00000491769 TSPY2A6NKD2 308 aa15.24■□□□□ 0.03
COL6A3-212ENST00000491769 CAMK4Q16566 473 aa15.24■□□□□ 0.03
COL6A3-212ENST00000491769 THUMPD2Q9BTF0 503 aaKnown RBP15.24■□□□□ 0.03
COL6A3-212ENST00000491769 WDR63Q8IWG1 891 aa15.24■□□□□ 0.03
COL6A3-212ENST00000491769 KAT14Q9H8E8 782 aa15.24■□□□□ 0.03
COL6A3-212ENST00000491769 A0A087WZG4 1122 aa15.24■□□□□ 0.03
COL6A3-212ENST00000491769 FCHSD2O94868 740 aa15.24■□□□□ 0.03
COL6A3-212ENST00000491769 MVPQ14764 893 aaKnown RBP15.24■□□□□ 0.03
COL6A3-212ENST00000491769 PHAXQ9H814 394 aaKnown RBP15.24■□□□□ 0.03
COL6A3-212ENST00000491769 EIF3JO75822 258 aaKnown RBP15.23■□□□□ 0.03
COL6A3-212ENST00000491769 FGFR1OPO95684 399 aaKnown RBP15.23■□□□□ 0.03
COL6A3-212ENST00000491769 CETN1Q12798 172 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 CCDC83Q8IWF9 413 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 MMRN2Q9H8L6 949 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 C9orf84Q5VXU9 1444 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 CCDC144CPQ8IYA2 1237 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 AMOTL2Q9Y2J4 779 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 PLEKHH2Q8IVE3 1493 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 RPGRIP1LQ68CZ1 1315 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 TDRD12Q587J7 1177 aaKnown RBP15.23■□□□□ 0.03
COL6A3-212ENST00000491769 PRC1O43663 620 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 TOM1O60784 492 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 MAP2K1Q02750 393 aaPredicted RBP15.23■□□□□ 0.03
COL6A3-212ENST00000491769 PDE3AQ14432 1141 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 OGFOD1Q8N543 542 aa15.23■□□□□ 0.03
COL6A3-212ENST00000491769 SMARCA5O60264 1052 aaPredicted RBP15.22■□□□□ 0.03
COL6A3-212ENST00000491769 KIF20AO95235 890 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 LRSAM1Q6UWE0 723 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 CCDC102AQ96A19 550 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 LMAN1P49257 510 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 FERMT3Q86UX7 667 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 UTP14AQ9BVJ6 771 aaKnown RBP15.22■□□□□ 0.03
COL6A3-212ENST00000491769 SMARCA4P51532 1647 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 GOLGA6L10A0A0M3HER8 536 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 NBPF8Q3BBV2 869 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 NBPF14Q5TI25 921 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 CALML4Q96GE6 196 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 C8orf76Q96K31 380 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 PDE4BQ07343 736 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 VEZTQ9HBM0 779 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 UBE4AQ14139 1066 aa15.22■□□□□ 0.03
COL6A3-212ENST00000491769 CHRNA2Q15822 529 aa15.21■□□□□ 0.03
COL6A3-212ENST00000491769 CCDC12Q8WUD4 166 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-212ENST00000491769 RAB11FIP3O75154 756 aa15.21■□□□□ 0.03
COL6A3-212ENST00000491769 TTC21AQ8NDW8 1320 aa15.21■□□□□ 0.03
COL6A3-212ENST00000491769 GLRX3O76003 335 aaKnown RBP15.21■□□□□ 0.03
COL6A3-212ENST00000491769 LDHAL6AQ6ZMR3 332 aa15.21■□□□□ 0.02
COL6A3-212ENST00000491769 IDEP14735 1019 aa15.21■□□□□ 0.02
COL6A3-212ENST00000491769 PICALMQ13492 652 aa15.21■□□□□ 0.02
COL6A3-212ENST00000491769 STXBP4Q6ZWJ1 553 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 FERMT1Q9BQL6 677 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 HFM1A2PYH4 1435 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 CCDC40Q4G0X9 1142 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 RPAP2Q8IXW5 612 aaPredicted RBP15.2■□□□□ 0.02
COL6A3-212ENST00000491769 SYNCQ9H7C4 482 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 ATP5J2-PTCD1G3V325 749 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 LUZP1Q86V48 1076 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 TEX13AQ9BXU3 409 aaPredicted RBP15.2■□□□□ 0.02
COL6A3-212ENST00000491769 MX1P20591 662 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 GSTO1P78417 241 aa15.2■□□□□ 0.02
COL6A3-212ENST00000491769 CCDC174Q6PII3 467 aa15.19■□□□□ 0.02
COL6A3-212ENST00000491769 SETDB2Q96T68 719 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms