RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TRPM2O94759 1503 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 PREX2Q70Z35 1606 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 ORAI2Q96SN7 254 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 MAGI2Q86UL8 1455 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 LMTK3Q96Q04 1460 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 A0A0U1RQG5 324 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 IGHMBP2P38935 993 aaKnown RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 ANKRD1Q15327 319 aa13.07□□□□□ -0.32
HDAC6-228ENST00000486227 SLC3A2P08195 630 aaKnown RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 C8orf37Q96NL8 207 aa13.07□□□□□ -0.32
HDAC6-228ENST00000486227 CASTP20810 708 aaKnown RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 WDR33Q9C0J8 1336 aaKnown RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 IDH1O75874 414 aaKnown RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 ATP2B1P20020 1258 aa13.07□□□□□ -0.32
HDAC6-228ENST00000486227 GPTP24298 496 aa13.07□□□□□ -0.32
HDAC6-228ENST00000486227 CEBPZQ03701 1054 aaKnown RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 IKQ13123 557 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 PRPF40BQ6NWY9 871 aaKnown RBP13.07□□□□□ -0.32
HDAC6-228ENST00000486227 ZBTB40Q9NUA8 1239 aa13.07□□□□□ -0.32
HDAC6-228ENST00000486227 ZFYVE16Q7Z3T8 1539 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 ZCCHC11Q5TAX3 1644 aaKnown RBP13.06□□□□□ -0.32
HDAC6-228ENST00000486227 LARP1BQ659C4 914 aaKnown RBP13.06□□□□□ -0.32
HDAC6-228ENST00000486227 ANKRD13DQ6ZTN6 518 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 IP6K1Q92551 441 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 SDF4Q9BRK5 362 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 SBNO2Q9Y2G9 1366 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 TTC22Q5TAA0 569 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 COPS6Q7L5N1 327 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 XAGE3Q8WTP9 111 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 ECHDC1Q9NTX5 307 aa13.06□□□□□ -0.32
HDAC6-228ENST00000486227 TEX13AQ9BXU3 409 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-228ENST00000486227 MLH3Q9UHC1 1453 aa13.05□□□□□ -0.32
HDAC6-228ENST00000486227 LETM1O95202 739 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-228ENST00000486227 PIP4K2AP48426 406 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-228ENST00000486227 ZCRB1Q8TBF4 217 aaKnown RBP13.05□□□□□ -0.32
HDAC6-228ENST00000486227 BCL11BQ9C0K0 894 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-228ENST00000486227 TRMT112Q9UI30 125 aaKnown RBP13.05□□□□□ -0.32
HDAC6-228ENST00000486227 IFIT5Q13325 482 aaKnown RBP13.05□□□□□ -0.32
HDAC6-228ENST00000486227 HSP90AB3PQ58FF7 597 aa13.05□□□□□ -0.32
HDAC6-228ENST00000486227 C16orf71Q8IYS4 520 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-228ENST00000486227 ZSCAN25Q6NSZ9 544 aa13.05□□□□□ -0.32
HDAC6-228ENST00000486227 IFIT1P09914 478 aaKnown RBP13.04□□□□□ -0.32
HDAC6-228ENST00000486227 RHPN1Q8TCX5 695 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 RBM5P52756 815 aaKnown RBP eCLIP13.04□□□□□ -0.32
HDAC6-228ENST00000486227 CCAR1Q8IX12 1150 aaKnown RBP13.04□□□□□ -0.32
HDAC6-228ENST00000486227 NFATC2IPQ8NCF5 419 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 TNPO1Q92973 898 aaKnown RBP13.04□□□□□ -0.32
HDAC6-228ENST00000486227 NACAP1Q9BZK3 213 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 PLEKHG3A1L390 1219 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 ZNF592Q92610 1267 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 SDSP20132 328 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 KRT32Q14532 448 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 AK7Q96M32 723 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 AKAP2Q9Y2D5 859 aa13.04□□□□□ -0.32
HDAC6-228ENST00000486227 MAP3K5Q99683 1374 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 ZSCAN31Q96LW9 406 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-228ENST00000486227 PANK2Q9BZ23 570 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 CTNNA3Q9UI47 895 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 ZMYM4Q5VZL5 1548 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 BLMP54132 1417 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-228ENST00000486227 KDM5DQ9BY66 1539 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 KDM5CP41229 1560 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 CCDC43Q96MW1 224 aaKnown RBP13.03□□□□□ -0.32
HDAC6-228ENST00000486227 G2E3Q7L622 706 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 CWC25Q9NXE8 425 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-228ENST00000486227 LRP2BPQ9P2M1 347 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 ABCF2Q9UG63 623 aa13.03□□□□□ -0.32
HDAC6-228ENST00000486227 ATP8B2P98198 1209 aa13.02□□□□□ -0.32
HDAC6-228ENST00000486227 KSR2Q6VAB6 950 aa13.02□□□□□ -0.32
HDAC6-228ENST00000486227 SMC5Q8IY18 1101 aa13.02□□□□□ -0.32
HDAC6-228ENST00000486227 ERVK-7P63135 1459 aa13.02□□□□□ -0.32
HDAC6-228ENST00000486227 XBP1P17861 261 aa13.02□□□□□ -0.33
HDAC6-228ENST00000486227 PDE1AP54750 535 aa13.02□□□□□ -0.33
HDAC6-228ENST00000486227 CCDC66A2RUB6 948 aa13.02□□□□□ -0.33
HDAC6-228ENST00000486227 RRAGDQ9NQL2 400 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-228ENST00000486227 RAI14Q9P0K7 980 aa13.02□□□□□ -0.33
HDAC6-228ENST00000486227 HOOK1Q9UJC3 728 aaKnown RBP13.02□□□□□ -0.33
HDAC6-228ENST00000486227 SBNO1A3KN83 1393 aa13.02□□□□□ -0.33
HDAC6-228ENST00000486227 CEP85Q6P2H3 762 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 CCDC83Q8IWF9 413 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 PHAXQ9H814 394 aaKnown RBP13.01□□□□□ -0.33
HDAC6-228ENST00000486227 METP08581 1390 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 LARP6Q9BRS8 491 aaKnown RBP13.01□□□□□ -0.33
HDAC6-228ENST00000486227 KRT85P78386 507 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 STK38Q15208 465 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 DDB1Q16531 1140 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 CCDC47Q96A33 483 aaKnown RBP13.01□□□□□ -0.33
HDAC6-228ENST00000486227 DCTPP1Q9H773 170 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 GRM8O00222 908 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 CHL1O00533 1208 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 ZBTB7BO15156 539 aaPredicted RBP13.01□□□□□ -0.33
HDAC6-228ENST00000486227 KINO60870 393 aaKnown RBP13.01□□□□□ -0.33
HDAC6-228ENST00000486227 TDO2P48775 406 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 DDX11Q96FC9 970 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 CDC42BPAQ5VT25 1732 aa13.01□□□□□ -0.33
HDAC6-228ENST00000486227 MCM5P33992 734 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 PRDM15P57071 1507 aaPredicted RBP13□□□□□ -0.33
HDAC6-228ENST00000486227 INSRP06213 1382 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 TEX35Q5T0J7 233 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 FERMT3Q86UX7 667 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 449 ms