RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PTCD1O75127 700 aaKnown RBP10.56□□□□□ -0.72
USP40-216ENST00000485943 NEUROD2Q15784 382 aa10.56□□□□□ -0.72
USP40-216ENST00000485943 PTF1AQ7RTS3 328 aa10.56□□□□□ -0.72
USP40-216ENST00000485943 NFATC2IPQ8NCF5 419 aa10.56□□□□□ -0.72
USP40-216ENST00000485943 PIGBQ92521 554 aa10.56□□□□□ -0.72
USP40-216ENST00000485943 RNMTO43148 476 aaKnown RBP10.55□□□□□ -0.72
USP40-216ENST00000485943 RSPH6AQ9H0K4 717 aa10.55□□□□□ -0.72
USP40-216ENST00000485943 VIRMAQ69YN4 1812 aaKnown RBP10.55□□□□□ -0.72
USP40-216ENST00000485943 COL3A1P02461 1466 aaPredicted RBP10.55□□□□□ -0.72
USP40-216ENST00000485943 RREB1Q92766 1687 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 LOC102724428A0A0B4J2F2 783 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 SIK1P57059 783 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 SLC15A2Q16348 729 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 NUP188Q5SRE5 1749 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 CCDC146Q8IYE0 955 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 MS4A3Q96HJ5 214 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 ARXQ96QS3 562 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 SLC52A2Q9HAB3 445 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 TRPC6Q9Y210 931 aa10.54□□□□□ -0.72
USP40-216ENST00000485943 SCN11AQ9UI33 1791 aa10.53□□□□□ -0.72
USP40-216ENST00000485943 BTBD11A6QL63 1104 aa10.53□□□□□ -0.72
USP40-216ENST00000485943 PHF14O94880 888 aa10.53□□□□□ -0.72
USP40-216ENST00000485943 POLD1P28340 1107 aa10.53□□□□□ -0.72
USP40-216ENST00000485943 KCNQ4P56696 695 aa10.53□□□□□ -0.72
USP40-216ENST00000485943 FLAD1Q8NFF5 587 aa10.53□□□□□ -0.72
USP40-216ENST00000485943 SPON1Q9HCB6 807 aa10.53□□□□□ -0.72
USP40-216ENST00000485943 ASAP1Q9ULH1 1129 aa10.53□□□□□ -0.72
USP40-216ENST00000485943 RIPK4P57078 832 aa10.52□□□□□ -0.73
USP40-216ENST00000485943 PNISRQ8TF01 805 aaKnown RBP10.52□□□□□ -0.73
USP40-216ENST00000485943 RUNDC1Q96C34 613 aa10.52□□□□□ -0.73
USP40-216ENST00000485943 LGR6Q9HBX8 967 aa10.52□□□□□ -0.73
USP40-216ENST00000485943 ZNF330Q9Y3S2 320 aaPredicted RBP10.52□□□□□ -0.73
USP40-216ENST00000485943 LAS1LQ9Y4W2 734 aaKnown RBP10.52□□□□□ -0.73
USP40-216ENST00000485943 TOGARAM1Q9Y4F4 1720 aa10.51□□□□□ -0.73
USP40-216ENST00000485943 GNPATO15228 680 aa10.51□□□□□ -0.73
USP40-216ENST00000485943 HTATSF1O43719 755 aaKnown RBP10.51□□□□□ -0.73
USP40-216ENST00000485943 NFE2L2Q16236 605 aa10.51□□□□□ -0.73
USP40-216ENST00000485943 MCM10Q7L590 875 aa10.51□□□□□ -0.73
USP40-216ENST00000485943 MS4A4AQ96JQ5 239 aa10.51□□□□□ -0.73
USP40-216ENST00000485943 RTCBQ9Y3I0 505 aaKnown RBP10.51□□□□□ -0.73
USP40-216ENST00000485943 LY75O60449 1722 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 NPHP1O15259 732 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 ZBTB7AO95365 584 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 STARD3NLO95772 234 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 CALD1Q05682 793 aaKnown RBP10.5□□□□□ -0.73
USP40-216ENST00000485943 FAM9BQ8IZU0 186 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 PHACTR3Q96KR7 559 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 FMNL2Q96PY5 1086 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 ATG3Q9NT62 314 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 C5P01031 1676 aa10.5□□□□□ -0.73
USP40-216ENST00000485943 KDM6AO15550 1401 aaPredicted RBP10.5□□□□□ -0.73
USP40-216ENST00000485943 RFC4P35249 363 aa10.49□□□□□ -0.73
USP40-216ENST00000485943 SLC39A6Q13433 755 aa10.49□□□□□ -0.73
USP40-216ENST00000485943 TMEM106CQ9BVX2 250 aa10.49□□□□□ -0.73
USP40-216ENST00000485943 TEX13AQ9BXU3 409 aaPredicted RBP10.49□□□□□ -0.73
USP40-216ENST00000485943 ANO8Q9HCE9 1232 aaPredicted RBP10.49□□□□□ -0.73
USP40-216ENST00000485943 LRRC4BQ9NT99 713 aa10.49□□□□□ -0.73
USP40-216ENST00000485943 ADAMTS8Q9UP79 889 aa10.49□□□□□ -0.73
USP40-216ENST00000485943 RRP7AQ9Y3A4 280 aaKnown RBP10.49□□□□□ -0.73
USP40-216ENST00000485943 DCTN1Q14203 1278 aa10.48□□□□□ -0.73
USP40-216ENST00000485943 TAF7Q15545 349 aaPredicted RBP10.48□□□□□ -0.73
USP40-216ENST00000485943 TRAPPC3LQ5T215 181 aa10.48□□□□□ -0.73
USP40-216ENST00000485943 KCNV2Q8TDN2 545 aa10.48□□□□□ -0.73
USP40-216ENST00000485943 MTFR1LQ9H019 292 aa10.48□□□□□ -0.73
USP40-216ENST00000485943 TSPYL4Q9UJ04 414 aa10.48□□□□□ -0.73
USP40-216ENST00000485943 DLG5Q8TDM6 1919 aa10.47□□□□□ -0.73
USP40-216ENST00000485943 ZPR1O75312 459 aa10.47□□□□□ -0.73
USP40-216ENST00000485943 DIEXFQ68CQ4 756 aaKnown RBP10.47□□□□□ -0.73
USP40-216ENST00000485943 ZNF790Q6PG37 636 aa10.47□□□□□ -0.73
USP40-216ENST00000485943 SLC16A10Q8TF71 515 aa10.47□□□□□ -0.73
USP40-216ENST00000485943 SSFA2P28290 1259 aa10.46□□□□□ -0.73
USP40-216ENST00000485943 TMPOP42166 694 aaKnown RBP10.46□□□□□ -0.73
USP40-216ENST00000485943 ZNF827Q17R98 1081 aa10.46□□□□□ -0.73
USP40-216ENST00000485943 IL17REQ8NFR9 667 aa10.46□□□□□ -0.73
USP40-216ENST00000485943 C4BP0C0L5 1744 aa10.46□□□□□ -0.74
USP40-216ENST00000485943 TAF1LQ8IZX4 1826 aa10.46□□□□□ -0.74
USP40-216ENST00000485943 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.45□□□□□ -0.74
USP40-216ENST00000485943 CANXP27824 592 aaKnown RBP10.45□□□□□ -0.74
USP40-216ENST00000485943 CRKLP46109 303 aaKnown RBP10.45□□□□□ -0.74
USP40-216ENST00000485943 MSL1Q68DK7 614 aa10.45□□□□□ -0.74
USP40-216ENST00000485943 LINC00116Q8NCU8 138 aa10.45□□□□□ -0.74
USP40-216ENST00000485943 CCDC87Q9NVE4 849 aa10.45□□□□□ -0.74
USP40-216ENST00000485943 SALL2Q9Y467 1007 aaPredicted RBP10.45□□□□□ -0.74
USP40-216ENST00000485943 A0A087WZG4 1122 aa10.44□□□□□ -0.74
USP40-216ENST00000485943 APAF1O14727 1248 aa10.44□□□□□ -0.74
USP40-216ENST00000485943 SNRPA1P09661 255 aaKnown RBP10.44□□□□□ -0.74
USP40-216ENST00000485943 DNAJC10Q8IXB1 793 aa10.44□□□□□ -0.74
USP40-216ENST00000485943 PLEKHF1Q96S99 279 aa10.44□□□□□ -0.74
USP40-216ENST00000485943 WDR70Q9NW82 654 aa10.44□□□□□ -0.74
USP40-216ENST00000485943 CNTNAP4Q9C0A0 1308 aa10.43□□□□□ -0.74
USP40-216ENST00000485943 TIE1P35590 1138 aa10.43□□□□□ -0.74
USP40-216ENST00000485943 RC3H1Q5TC82 1133 aaKnown RBP10.43□□□□□ -0.74
USP40-216ENST00000485943 PELP1Q8IZL8 1130 aaKnown RBP10.43□□□□□ -0.74
USP40-216ENST00000485943 THUMPD2Q9BTF0 503 aaKnown RBP10.43□□□□□ -0.74
USP40-216ENST00000485943 CHMP4AQ9BY43 222 aa10.43□□□□□ -0.74
USP40-216ENST00000485943 MIS18AQ9NYP9 233 aa10.43□□□□□ -0.74
USP40-216ENST00000485943 MRC1P22897 1456 aa10.42□□□□□ -0.74
USP40-216ENST00000485943 HEG1Q9ULI3 1381 aa10.42□□□□□ -0.74
USP40-216ENST00000485943 PNPLA7Q6ZV29 1317 aa10.42□□□□□ -0.74
USP40-216ENST00000485943 TTLL13PA6NNM8 815 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms