RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 DNAAF4Q8WXU2 420 aa18.65■□□□□ 0.58
C9orf3-218ENST00000482056 IL1RAPL2Q9NP60 686 aa18.65■□□□□ 0.58
C9orf3-218ENST00000482056 ZDHHC9Q9Y397 364 aa18.65■□□□□ 0.58
C9orf3-218ENST00000482056 MBD3O95983 291 aa18.64■□□□□ 0.58
C9orf3-218ENST00000482056 PHRF1Q9P1Y6 1649 aaKnown RBP18.64■□□□□ 0.57
C9orf3-218ENST00000482056 SRGAP3O43295 1099 aa18.64■□□□□ 0.57
C9orf3-218ENST00000482056 PLEKHO1Q53GL0 409 aaPredicted RBP18.64■□□□□ 0.57
C9orf3-218ENST00000482056 AKAP4Q5JQC9 854 aa18.64■□□□□ 0.57
C9orf3-218ENST00000482056 HDAC5Q9UQL6 1122 aa18.64■□□□□ 0.57
C9orf3-218ENST00000482056 PSME1Q06323 249 aa18.63■□□□□ 0.57
C9orf3-218ENST00000482056 NBPF6Q5VWK0 638 aa18.63■□□□□ 0.57
C9orf3-218ENST00000482056 NUTM1Q86Y26 1132 aa18.63■□□□□ 0.57
C9orf3-218ENST00000482056 CNTROBQ8N137 903 aa18.63■□□□□ 0.57
C9orf3-218ENST00000482056 NBPF4Q96M43 638 aa18.63■□□□□ 0.57
C9orf3-218ENST00000482056 PALD1Q9ULE6 856 aa18.63■□□□□ 0.57
C9orf3-218ENST00000482056 BRD1O95696 1058 aa18.62■□□□□ 0.57
C9orf3-218ENST00000482056 AMOTQ4VCS5 1084 aa18.62■□□□□ 0.57
C9orf3-218ENST00000482056 CHPF2Q9P2E5 772 aa18.62■□□□□ 0.57
C9orf3-218ENST00000482056 NCAPD2Q15021 1401 aa18.62■□□□□ 0.57
C9orf3-218ENST00000482056 BTBD11A6QL63 1104 aa18.62■□□□□ 0.57
C9orf3-218ENST00000482056 BEND3Q5T5X7 828 aa18.62■□□□□ 0.57
C9orf3-218ENST00000482056 ZNF530Q6P9A1 599 aaPredicted RBP18.62■□□□□ 0.57
C9orf3-218ENST00000482056 UNC5CLQ8IV45 518 aa18.62■□□□□ 0.57
C9orf3-218ENST00000482056 HSPA4P34932 840 aa18.61■□□□□ 0.57
C9orf3-218ENST00000482056 ANKLE2Q86XL3 938 aa18.61■□□□□ 0.57
C9orf3-218ENST00000482056 LGR6Q9HBX8 967 aa18.61■□□□□ 0.57
C9orf3-218ENST00000482056 PI4KAP2A4QPH2 592 aa18.61■□□□□ 0.57
C9orf3-218ENST00000482056 PI4KAP1Q8N8J0 262 aa18.61■□□□□ 0.57
C9orf3-218ENST00000482056 NAP1L5Q96NT1 182 aaPredicted RBP18.61■□□□□ 0.57
C9orf3-218ENST00000482056 SETD1BQ9UPS6 1966 aaKnown RBP18.6■□□□□ 0.57
C9orf3-218ENST00000482056 OVOS2A0A0G2JMS6 1433 aa18.6■□□□□ 0.57
C9orf3-218ENST00000482056 ZBTB7CA1YPR0 619 aa18.6■□□□□ 0.57
C9orf3-218ENST00000482056 C1orf141Q5JVX7 400 aa18.6■□□□□ 0.57
C9orf3-218ENST00000482056 KIAA1211Q6ZU35 1233 aa18.6■□□□□ 0.57
C9orf3-218ENST00000482056 PI4K2BQ8TCG2 481 aa18.6■□□□□ 0.57
C9orf3-218ENST00000482056 GPT2Q8TD30 523 aa18.6■□□□□ 0.57
C9orf3-218ENST00000482056 DBF4Q9UBU7 674 aaPredicted RBP18.6■□□□□ 0.57
C9orf3-218ENST00000482056 TTC41PQ6P2S7 1318 aa18.59■□□□□ 0.57
C9orf3-218ENST00000482056 OS9Q13438 667 aaPredicted RBP18.59■□□□□ 0.57
C9orf3-218ENST00000482056 RAD50Q92878 1312 aa18.59■□□□□ 0.57
C9orf3-218ENST00000482056 SGSM2O43147 1006 aa18.59■□□□□ 0.57
C9orf3-218ENST00000482056 NBPF7P0C2Y1 421 aaPredicted RBP18.59■□□□□ 0.57
C9orf3-218ENST00000482056 ESCO1Q5FWF5 840 aa18.59■□□□□ 0.57
C9orf3-218ENST00000482056 USP42Q9H9J4 1324 aaKnown RBP18.58■□□□□ 0.56
C9orf3-218ENST00000482056 ALDH1L1O75891 902 aa18.58■□□□□ 0.56
C9orf3-218ENST00000482056 NOL8Q76FK4 1167 aaKnown RBP18.58■□□□□ 0.56
C9orf3-218ENST00000482056 SYAP1Q96A49 352 aaPredicted RBP18.58■□□□□ 0.56
C9orf3-218ENST00000482056 GPATCH3Q96I76 525 aa18.58■□□□□ 0.56
C9orf3-218ENST00000482056 RGPD2P0DJD1 1756 aa18.58■□□□□ 0.56
C9orf3-218ENST00000482056 ERBB4Q15303 1308 aa18.57■□□□□ 0.56
C9orf3-218ENST00000482056 WDR33Q9C0J8 1336 aaKnown RBP18.57■□□□□ 0.56
C9orf3-218ENST00000482056 GLRX3O76003 335 aaKnown RBP18.57■□□□□ 0.56
C9orf3-218ENST00000482056 LRSAM1Q6UWE0 723 aa18.57■□□□□ 0.56
C9orf3-218ENST00000482056 ERC1Q8IUD2 1116 aa18.57■□□□□ 0.56
C9orf3-218ENST00000482056 RUFY2Q8WXA3 655 aa18.57■□□□□ 0.56
C9orf3-218ENST00000482056 UPF3BQ9BZI7 483 aaKnown RBP18.57■□□□□ 0.56
C9orf3-218ENST00000482056 MTX1Q13505 466 aa18.57■□□□□ 0.56
C9orf3-218ENST00000482056 FOXD4L5Q5VV16 416 aaPredicted RBP18.57■□□□□ 0.56
C9orf3-218ENST00000482056 FOXD4L4Q8WXT5 416 aaPredicted RBP18.57■□□□□ 0.56
C9orf3-218ENST00000482056 RNMTO43148 476 aaKnown RBP18.56■□□□□ 0.56
C9orf3-218ENST00000482056 MAP4K4O95819 1239 aaPredicted RBP18.56■□□□□ 0.56
C9orf3-218ENST00000482056 HS1BP3Q53T59 392 aa18.56■□□□□ 0.56
C9orf3-218ENST00000482056 ZSCAN30Q86W11 494 aa18.56■□□□□ 0.56
C9orf3-218ENST00000482056 CLASRPQ8N2M8 674 aaKnown RBP18.56■□□□□ 0.56
C9orf3-218ENST00000482056 ADCY9O60503 1353 aa18.56■□□□□ 0.56
C9orf3-218ENST00000482056 C9orf78Q9NZ63 289 aaPredicted RBP18.55■□□□□ 0.56
C9orf3-218ENST00000482056 RBM27Q9P2N5 1060 aaKnown RBP18.55■□□□□ 0.56
C9orf3-218ENST00000482056 CRYBG1Q9Y4K1 1723 aa18.55■□□□□ 0.56
C9orf3-218ENST00000482056 PLEKHG5O94827 1062 aa18.55■□□□□ 0.56
C9orf3-218ENST00000482056 PRIM1P49642 420 aaKnown RBP18.55■□□□□ 0.56
C9orf3-218ENST00000482056 MPRIPQ6WCQ1 1025 aa18.55■□□□□ 0.56
C9orf3-218ENST00000482056 KCNQ3O43525 872 aa18.54■□□□□ 0.56
C9orf3-218ENST00000482056 MSNP26038 577 aaKnown RBP18.54■□□□□ 0.56
C9orf3-218ENST00000482056 RBSNQ9H1K0 784 aa18.54■□□□□ 0.56
C9orf3-218ENST00000482056 DIAPH3Q9NSV4 1193 aa18.54■□□□□ 0.56
C9orf3-218ENST00000482056 TMEM63CQ9P1W3 806 aa18.54■□□□□ 0.56
C9orf3-218ENST00000482056 ZNF142P52746 1687 aaPredicted RBP18.54■□□□□ 0.56
C9orf3-218ENST00000482056 PHF14O94880 888 aa18.53■□□□□ 0.56
C9orf3-218ENST00000482056 KSR2Q6VAB6 950 aa18.53■□□□□ 0.56
C9orf3-218ENST00000482056 LRRC59Q96AG4 307 aaKnown RBP18.53■□□□□ 0.56
C9orf3-218ENST00000482056 LSG1Q9H089 658 aaKnown RBP18.53■□□□□ 0.56
C9orf3-218ENST00000482056 SNX14Q9Y5W7 946 aa18.53■□□□□ 0.56
C9orf3-218ENST00000482056 HYPKQ9NX55 129 aa18.53■□□□□ 0.56
C9orf3-218ENST00000482056 MAP3K2Q9Y2U5 619 aa18.53■□□□□ 0.56
C9orf3-218ENST00000482056 SLIT3O75094 1523 aa18.52■□□□□ 0.56
C9orf3-218ENST00000482056 IL25Q9H293 177 aa18.52■□□□□ 0.56
C9orf3-218ENST00000482056 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.52■□□□□ 0.56
C9orf3-218ENST00000482056 SYCE3A1L190 88 aa18.51■□□□□ 0.55
C9orf3-218ENST00000482056 DDX58O95786 925 aaKnown RBP18.51■□□□□ 0.55
C9orf3-218ENST00000482056 GCP02774 474 aa18.51■□□□□ 0.55
C9orf3-218ENST00000482056 ANXA1P04083 346 aa18.51■□□□□ 0.55
C9orf3-218ENST00000482056 IFIT2P09913 472 aaKnown RBP18.51■□□□□ 0.55
C9orf3-218ENST00000482056 CWC27Q6UX04 472 aaKnown RBP18.51■□□□□ 0.55
C9orf3-218ENST00000482056 ARHGEF25Q86VW2 580 aa18.51■□□□□ 0.55
C9orf3-218ENST00000482056 ECHDC1Q9NTX5 307 aa18.51■□□□□ 0.55
C9orf3-218ENST00000482056 GIGYF1O75420 1035 aaPredicted RBP18.51■□□□□ 0.55
C9orf3-218ENST00000482056 LIMCH1Q9UPQ0 1083 aa18.51■□□□□ 0.55
C9orf3-218ENST00000482056 ANKRD24Q8TF21 1146 aa18.5■□□□□ 0.55
C9orf3-218ENST00000482056 LMTK3Q96Q04 1460 aa18.5■□□□□ 0.55
C9orf3-218ENST00000482056 PDLIM2Q96JY6 352 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms