RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 MAP3K2Q9Y2U5 619 aa17.95■□□□□ 0.46
CHD3-211ENST00000481999 USP16Q9Y5T5 823 aa17.95■□□□□ 0.46
CHD3-211ENST00000481999 ABCA3Q99758 1704 aa17.94■□□□□ 0.46
CHD3-211ENST00000481999 ADAMTS7Q9UKP4 1686 aa17.94■□□□□ 0.46
CHD3-211ENST00000481999 HOXB7P09629 217 aa17.94■□□□□ 0.46
CHD3-211ENST00000481999 PDIA6Q15084 440 aa17.94■□□□□ 0.46
CHD3-211ENST00000481999 BEND3Q5T5X7 828 aa17.94■□□□□ 0.46
CHD3-211ENST00000481999 SRCIN1Q9C0H9 1055 aa17.94■□□□□ 0.46
CHD3-211ENST00000481999 SOS1Q07889 1333 aaPredicted RBP17.94■□□□□ 0.46
CHD3-211ENST00000481999 C5P01031 1676 aa17.94■□□□□ 0.46
CHD3-211ENST00000481999 UBTFL1P0CB47 393 aaPredicted RBP17.93■□□□□ 0.46
CHD3-211ENST00000481999 EVA1CP58658 441 aa17.93■□□□□ 0.46
CHD3-211ENST00000481999 DCAF5Q96JK2 942 aa17.93■□□□□ 0.46
CHD3-211ENST00000481999 OVOS2A0A0G2JMS6 1433 aa17.93■□□□□ 0.46
CHD3-211ENST00000481999 PHLPP1O60346 1717 aa17.93■□□□□ 0.46
CHD3-211ENST00000481999 BMP2KLQ5H9B9 411 aa17.93■□□□□ 0.46
CHD3-211ENST00000481999 BTG4Q9NY30 223 aa17.92■□□□□ 0.46
CHD3-211ENST00000481999 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.92■□□□□ 0.46
CHD3-211ENST00000481999 GNAI3P08754 354 aa17.92■□□□□ 0.46
CHD3-211ENST00000481999 CABP4P57796 275 aa17.91■□□□□ 0.46
CHD3-211ENST00000481999 ZCRB1Q8TBF4 217 aaKnown RBP17.91■□□□□ 0.46
CHD3-211ENST00000481999 COL16A1Q07092 1604 aaPredicted RBP17.91■□□□□ 0.46
CHD3-211ENST00000481999 TBC1D9Q6ZT07 1266 aa17.91■□□□□ 0.46
CHD3-211ENST00000481999 PKD1L3Q7Z443 1732 aa17.9■□□□□ 0.46
CHD3-211ENST00000481999 ATP8B2P98198 1209 aa17.89■□□□□ 0.45
CHD3-211ENST00000481999 PPP1R42Q7Z4L9 355 aa17.89■□□□□ 0.45
CHD3-211ENST00000481999 TTC5Q8N0Z6 440 aa17.89■□□□□ 0.45
CHD3-211ENST00000481999 C22orf23Q9BZE7 217 aa17.89■□□□□ 0.45
CHD3-211ENST00000481999 IL1RAPL2Q9NP60 686 aa17.89■□□□□ 0.45
CHD3-211ENST00000481999 HMMRO75330 724 aa17.89■□□□□ 0.45
CHD3-211ENST00000481999 IL2RBP14784 551 aa17.89■□□□□ 0.45
CHD3-211ENST00000481999 JARID2Q92833 1246 aaPredicted RBP17.89■□□□□ 0.45
CHD3-211ENST00000481999 TBC1D2Q9BYX2 928 aa17.89■□□□□ 0.45
CHD3-211ENST00000481999 KAT6BQ8WYB5 2073 aa17.88■□□□□ 0.45
CHD3-211ENST00000481999 PTCD1O75127 700 aaKnown RBP17.88■□□□□ 0.45
CHD3-211ENST00000481999 ILDR1Q86SU0 546 aaPredicted RBP17.88■□□□□ 0.45
CHD3-211ENST00000481999 PXDNLA1KZ92 1463 aa17.88■□□□□ 0.45
CHD3-211ENST00000481999 ANTXR1Q9H6X2 564 aa17.88■□□□□ 0.45
CHD3-211ENST00000481999 TTC22Q5TAA0 569 aa17.87■□□□□ 0.45
CHD3-211ENST00000481999 COPS6Q7L5N1 327 aa17.87■□□□□ 0.45
CHD3-211ENST00000481999 XAGE3Q8WTP9 111 aa17.87■□□□□ 0.45
CHD3-211ENST00000481999 SLKQ9H2G2 1235 aaPredicted RBP17.87■□□□□ 0.45
CHD3-211ENST00000481999 DDX21Q9NR30 783 aaKnown RBP eCLIP17.87■□□□□ 0.45
CHD3-211ENST00000481999 ABCC6O95255 1503 aa17.87■□□□□ 0.45
CHD3-211ENST00000481999 SRGAP3O43295 1099 aa17.87■□□□□ 0.45
CHD3-211ENST00000481999 KSR2Q6VAB6 950 aa17.87■□□□□ 0.45
CHD3-211ENST00000481999 SPRYD3Q8NCJ5 442 aa17.87■□□□□ 0.45
CHD3-211ENST00000481999 CARD10Q9BWT7 1032 aa17.87■□□□□ 0.45
CHD3-211ENST00000481999 PCDH11XQ9BZA7 1347 aa17.86■□□□□ 0.45
CHD3-211ENST00000481999 PCDH11YQ9BZA8 1340 aa17.86■□□□□ 0.45
CHD3-211ENST00000481999 N4BP2Q86UW6 1770 aaPredicted RBP17.86■□□□□ 0.45
CHD3-211ENST00000481999 ADAMTS2O95450 1211 aa17.84■□□□□ 0.45
CHD3-211ENST00000481999 IGKV5-2P06315 115 aa17.84■□□□□ 0.45
CHD3-211ENST00000481999 PRKCSHP14314 528 aaPredicted RBP17.84■□□□□ 0.45
CHD3-211ENST00000481999 SDSP20132 328 aa17.84■□□□□ 0.45
CHD3-211ENST00000481999 LRP10Q7Z4F1 713 aa17.84■□□□□ 0.45
CHD3-211ENST00000481999 HYPKQ9NX55 129 aa17.84■□□□□ 0.45
CHD3-211ENST00000481999 C9orf78Q9NZ63 289 aaPredicted RBP17.84■□□□□ 0.45
CHD3-211ENST00000481999 SURF6O75683 361 aaKnown RBP17.84■□□□□ 0.45
CHD3-211ENST00000481999 RIC3Q7Z5B4 369 aa17.84■□□□□ 0.45
CHD3-211ENST00000481999 LRRCC1Q9C099 1032 aa17.84■□□□□ 0.45
CHD3-211ENST00000481999 MRC1P22897 1456 aa17.84■□□□□ 0.45
CHD3-211ENST00000481999 SNRPA1P09661 255 aaKnown RBP17.83■□□□□ 0.45
CHD3-211ENST00000481999 FMNL2Q96PY5 1086 aa17.83■□□□□ 0.45
CHD3-211ENST00000481999 IBTKQ9P2D0 1353 aaPredicted RBP17.83■□□□□ 0.45
CHD3-211ENST00000481999 PDE1AP54750 535 aa17.83■□□□□ 0.44
CHD3-211ENST00000481999 PA2G4Q9UQ80 394 aaKnown RBP17.83■□□□□ 0.44
CHD3-211ENST00000481999 SHANK3Q9BYB0 1731 aa17.83■□□□□ 0.44
CHD3-211ENST00000481999 PARP4Q9UKK3 1724 aaKnown RBP17.83■□□□□ 0.44
CHD3-211ENST00000481999 NUTM1Q86Y26 1132 aa17.82■□□□□ 0.44
CHD3-211ENST00000481999 SSH3Q8TE77 659 aa17.82■□□□□ 0.44
CHD3-211ENST00000481999 KAZALD1Q96I82 304 aa17.82■□□□□ 0.44
CHD3-211ENST00000481999 GLI3P10071 1580 aa17.82■□□□□ 0.44
CHD3-211ENST00000481999 ATP5J2-PTCD1G3V325 749 aa17.81■□□□□ 0.44
CHD3-211ENST00000481999 HSP90AB1P08238 724 aaKnown RBP17.81■□□□□ 0.44
CHD3-211ENST00000481999 MYD88Q99836 296 aa17.81■□□□□ 0.44
CHD3-211ENST00000481999 NBPF26B4DH59 902 aa17.81■□□□□ 0.44
CHD3-211ENST00000481999 A1BGP04217 495 aa17.81■□□□□ 0.44
CHD3-211ENST00000481999 NBPF14Q5TI25 921 aa17.81■□□□□ 0.44
CHD3-211ENST00000481999 NBPF10Q6P3W6 841 aaKnown RBP17.81■□□□□ 0.44
CHD3-211ENST00000481999 NBPF15Q8N660 670 aa17.81■□□□□ 0.44
CHD3-211ENST00000481999 SUCLG2Q96I99 432 aa17.81■□□□□ 0.44
CHD3-211ENST00000481999 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.81■□□□□ 0.44
CHD3-211ENST00000481999 IL27Q8NEV9 243 aa17.8■□□□□ 0.44
CHD3-211ENST00000481999 RBM42Q9BTD8 480 aaKnown RBP17.8■□□□□ 0.44
CHD3-211ENST00000481999 JCADQ9P266 1359 aa17.8■□□□□ 0.44
CHD3-211ENST00000481999 CDC45O75419 566 aa17.8■□□□□ 0.44
CHD3-211ENST00000481999 KLHDC4Q8TBB5 520 aa17.8■□□□□ 0.44
CHD3-211ENST00000481999 POLA2Q14181 598 aa17.79■□□□□ 0.44
CHD3-211ENST00000481999 UNC5CLQ8IV45 518 aa17.79■□□□□ 0.44
CHD3-211ENST00000481999 SALL3Q9BXA9 1300 aa17.79■□□□□ 0.44
CHD3-211ENST00000481999 NUTM2BA6NNL0 878 aaPredicted RBP17.79■□□□□ 0.44
CHD3-211ENST00000481999 NUTM2EB1AL46 878 aaPredicted RBP17.79■□□□□ 0.44
CHD3-211ENST00000481999 GRM8O00222 908 aa17.79■□□□□ 0.44
CHD3-211ENST00000481999 MAP4K4O95819 1239 aaPredicted RBP17.79■□□□□ 0.44
CHD3-211ENST00000481999 NUTM2AQ8IVF1 878 aaPredicted RBP17.79■□□□□ 0.44
CHD3-211ENST00000481999 LINS1Q8NG48 757 aa17.79■□□□□ 0.44
CHD3-211ENST00000481999 BICC1Q9H694 974 aaKnown RBP17.79■□□□□ 0.44
CHD3-211ENST00000481999 ASAP1Q9ULH1 1129 aa17.79■□□□□ 0.44
CHD3-211ENST00000481999 ANKRD13DQ6ZTN6 518 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms