RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PPP1R9BQ96SB3 815 aa15.98■□□□□ 0.15
USP42-206ENST00000479544 SERPINC1P01008 464 aa15.98■□□□□ 0.15
USP42-206ENST00000479544 LUZP1Q86V48 1076 aa15.98■□□□□ 0.15
USP42-206ENST00000479544 TNRQ92752 1358 aa15.98■□□□□ 0.15
USP42-206ENST00000479544 ANXA1P04083 346 aa15.98■□□□□ 0.15
USP42-206ENST00000479544 BOLA2Q9H3K6 86 aa15.98■□□□□ 0.15
USP42-206ENST00000479544 POLR3AO14802 1390 aaPredicted RBP15.98■□□□□ 0.15
USP42-206ENST00000479544 PTPRTO14522 1441 aa15.98■□□□□ 0.15
USP42-206ENST00000479544 RIOK3O14730 519 aaKnown RBP15.97■□□□□ 0.15
USP42-206ENST00000479544 NEXNQ0ZGT2 675 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 TRIM35Q9UPQ4 493 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 ESYT1Q9BSJ8 1104 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 DCTPP1Q9H773 170 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 DACT1Q9NYF0 836 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 ITSN2Q9NZM3 1697 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 PIK3C2GO75747 1445 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 URI1O94763 535 aaPredicted RBP15.97■□□□□ 0.15
USP42-206ENST00000479544 ZSCAN22P10073 491 aaPredicted RBP15.97■□□□□ 0.15
USP42-206ENST00000479544 ANKRD44Q8N8A2 993 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 WASHC4Q2M389 1173 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 FBXO31Q5XUX0 539 aaPredicted RBP15.97■□□□□ 0.15
USP42-206ENST00000479544 RIC3Q7Z5B4 369 aa15.97■□□□□ 0.15
USP42-206ENST00000479544 ABCC11Q96J66 1382 aa15.96■□□□□ 0.15
USP42-206ENST00000479544 ANO6Q4KMQ2 910 aa15.96■□□□□ 0.15
USP42-206ENST00000479544 KIF18AQ8NI77 898 aa15.96■□□□□ 0.15
USP42-206ENST00000479544 NOC3LQ8WTT2 800 aaKnown RBP15.96■□□□□ 0.15
USP42-206ENST00000479544 CCDC8Q9H0W5 538 aaPredicted RBP15.96■□□□□ 0.15
USP42-206ENST00000479544 NSFL1CQ9UNZ2 370 aaKnown RBP15.96■□□□□ 0.15
USP42-206ENST00000479544 GSPT1P15170 499 aaKnown RBP15.96■□□□□ 0.14
USP42-206ENST00000479544 SMAP1Q8IYB5 467 aaPredicted RBP15.96■□□□□ 0.14
USP42-206ENST00000479544 DNAJC25Q9H1X3 360 aa15.96■□□□□ 0.14
USP42-206ENST00000479544 ADGRL2O95490 1459 aa15.96■□□□□ 0.14
USP42-206ENST00000479544 HSP90B2PQ58FF3 399 aa15.95■□□□□ 0.14
USP42-206ENST00000479544 ZSWIM4Q9H7M6 989 aa15.95■□□□□ 0.14
USP42-206ENST00000479544 SYTL4Q96C24 671 aaPredicted RBP15.95■□□□□ 0.14
USP42-206ENST00000479544 C1orf141Q5JVX7 400 aa15.95■□□□□ 0.14
USP42-206ENST00000479544 GCC2Q8IWJ2 1684 aa15.95■□□□□ 0.14
USP42-206ENST00000479544 RTEL1-TNFRSF6BF6WH68 1400 aa15.94■□□□□ 0.14
USP42-206ENST00000479544 NPATQ14207 1427 aa15.94■□□□□ 0.14
USP42-206ENST00000479544 FER1L4A9Z1Z3 1794 aa15.94■□□□□ 0.14
USP42-206ENST00000479544 CEP57L1Q8IYX8 460 aa15.94■□□□□ 0.14
USP42-206ENST00000479544 CEP135Q66GS9 1140 aa15.94■□□□□ 0.14
USP42-206ENST00000479544 CEP85Q6P2H3 762 aa15.94■□□□□ 0.14
USP42-206ENST00000479544 MYRIPQ8NFW9 859 aa15.94■□□□□ 0.14
USP42-206ENST00000479544 LRRC2Q9BYS8 371 aa15.94■□□□□ 0.14
USP42-206ENST00000479544 TAF7Q15545 349 aaPredicted RBP15.93■□□□□ 0.14
USP42-206ENST00000479544 HSP90AA4PQ58FG1 418 aa15.93■□□□□ 0.14
USP42-206ENST00000479544 BCL2L12Q9HB09 334 aa15.93■□□□□ 0.14
USP42-206ENST00000479544 SYT1P21579 422 aa15.93■□□□□ 0.14
USP42-206ENST00000479544 UVSSAQ2YD98 709 aa15.93■□□□□ 0.14
USP42-206ENST00000479544 SFPQP23246 707 aaKnown RBP eCLIP15.92■□□□□ 0.14
USP42-206ENST00000479544 CCT2P78371 535 aaKnown RBP15.92■□□□□ 0.14
USP42-206ENST00000479544 FLIIQ13045 1269 aa15.92■□□□□ 0.14
USP42-206ENST00000479544 TMCO3Q6UWJ1 677 aa15.92■□□□□ 0.14
USP42-206ENST00000479544 NFXL1Q6ZNB6 911 aa15.92■□□□□ 0.14
USP42-206ENST00000479544 DHX37Q8IY37 1157 aaKnown RBP15.92■□□□□ 0.14
USP42-206ENST00000479544 SKILP12757 684 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 CFAP100Q494V2 611 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 NUDT16Q96DE0 195 aaKnown RBP15.91■□□□□ 0.14
USP42-206ENST00000479544 CCDC61Q9Y6R9 512 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 SHANK2Q9UPX8 1470 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 AK2P54819 239 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 PPP1R42Q7Z4L9 355 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 ZSCAN31Q96LW9 406 aaPredicted RBP15.91■□□□□ 0.14
USP42-206ENST00000479544 PIBF1Q8WXW3 757 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 SLC26A8Q96RN1 970 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 TRIM29Q14134 588 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 CPLX2Q6PUV4 134 aaKnown RBP15.91■□□□□ 0.14
USP42-206ENST00000479544 RAB11FIP4Q86YS3 637 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 KIF1BPQ96EK5 621 aa15.91■□□□□ 0.14
USP42-206ENST00000479544 SCAND2PQ9GZW5 306 aaPredicted RBP15.91■□□□□ 0.14
USP42-206ENST00000479544 ZNF335Q9H4Z2 1342 aaPredicted RBP15.91■□□□□ 0.14
USP42-206ENST00000479544 F13A1P00488 732 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 RALYLQ86SE5 291 aaKnown RBP15.9■□□□□ 0.14
USP42-206ENST00000479544 FAM200AQ8TCP9 573 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 CCDC34Q96HJ3 373 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 FRMPD1Q5SYB0 1578 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 ZNF500O60304 480 aaPredicted RBP15.9■□□□□ 0.14
USP42-206ENST00000479544 OLFM4Q6UX06 510 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 ARHGAP45Q92619 1136 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 PALD1Q9ULE6 856 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 AGLP35573 1532 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 RICTORQ6R327 1708 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 USHBP1Q8N6Y0 703 aa15.9■□□□□ 0.14
USP42-206ENST00000479544 IL16Q14005 1332 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 PATL2C9JE40 543 aaKnown RBP15.89■□□□□ 0.13
USP42-206ENST00000479544 TYRO3Q06418 890 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 TPM1P09493 284 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 LRMPQ12912 555 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 G2E3Q7L622 706 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 PCMTD1Q96MG8 357 aaPredicted RBP15.89■□□□□ 0.13
USP42-206ENST00000479544 POLKQ9UBT6 870 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 DUOX2Q9NRD8 1548 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 TMC6Q7Z403 805 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 GTF3C6Q969F1 213 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 CFAP45Q9UL16 551 aa15.89■□□□□ 0.13
USP42-206ENST00000479544 GLRX3O76003 335 aaKnown RBP15.88■□□□□ 0.13
USP42-206ENST00000479544 MYL6BP14649 208 aa15.88■□□□□ 0.13
USP42-206ENST00000479544 TRDNQ13061 729 aa15.88■□□□□ 0.13
USP42-206ENST00000479544 KRT222Q8N1A0 295 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms