RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 RIPK4P57078 832 aa9.24□□□□□ -0.93
LIMD1-204ENST00000474665 NFATC2IPQ8NCF5 419 aa9.24□□□□□ -0.93
LIMD1-204ENST00000474665 SYTL4Q96C24 671 aaPredicted RBP9.24□□□□□ -0.93
LIMD1-204ENST00000474665 SLC52A2Q9HAB3 445 aa9.24□□□□□ -0.93
LIMD1-204ENST00000474665 CCNL1Q9UK58 526 aaPredicted RBP9.24□□□□□ -0.93
LIMD1-204ENST00000474665 KDM2BQ8NHM5 1336 aa9.24□□□□□ -0.93
LIMD1-204ENST00000474665 LY75O60449 1722 aa9.23□□□□□ -0.93
LIMD1-204ENST00000474665 HTATSF1O43719 755 aaKnown RBP9.23□□□□□ -0.93
LIMD1-204ENST00000474665 NEUROD2Q15784 382 aa9.23□□□□□ -0.93
LIMD1-204ENST00000474665 PNNQ9H307 717 aaKnown RBP9.23□□□□□ -0.93
LIMD1-204ENST00000474665 ATG3Q9NT62 314 aa9.23□□□□□ -0.93
LIMD1-204ENST00000474665 ASAP1Q9ULH1 1129 aa9.23□□□□□ -0.93
LIMD1-204ENST00000474665 MAPK8IP3Q9UPT6 1336 aa9.23□□□□□ -0.93
LIMD1-204ENST00000474665 SLC4A9Q96Q91 983 aa9.22□□□□□ -0.93
LIMD1-204ENST00000474665 A0A0G2JLW4 131 aa9.21□□□□□ -0.94
LIMD1-204ENST00000474665 KCNQ3O43525 872 aa9.21□□□□□ -0.94
LIMD1-204ENST00000474665 CABP4P57796 275 aa9.21□□□□□ -0.94
LIMD1-204ENST00000474665 SLC39A6Q13433 755 aa9.21□□□□□ -0.94
LIMD1-204ENST00000474665 AIDAQ96BJ3 306 aa9.21□□□□□ -0.94
LIMD1-204ENST00000474665 TMOD3Q9NYL9 352 aa9.21□□□□□ -0.94
LIMD1-204ENST00000474665 UBR2Q8IWV8 1755 aa9.21□□□□□ -0.94
LIMD1-204ENST00000474665 C10orf71Q711Q0 1435 aa9.21□□□□□ -0.94
LIMD1-204ENST00000474665 MYH14Q7Z406 1995 aaKnown RBP9.21□□□□□ -0.94
LIMD1-204ENST00000474665 TAF1LQ8IZX4 1826 aa9.2□□□□□ -0.94
LIMD1-204ENST00000474665 AMIGO3Q86WK7 504 aa9.2□□□□□ -0.94
LIMD1-204ENST00000474665 MIS18AQ9NYP9 233 aa9.2□□□□□ -0.94
LIMD1-204ENST00000474665 RNF181Q9P0P0 153 aa9.2□□□□□ -0.94
LIMD1-204ENST00000474665 KDM3BQ7LBC6 1761 aa9.19□□□□□ -0.94
LIMD1-204ENST00000474665 NEFMP07197 916 aa9.19□□□□□ -0.94
LIMD1-204ENST00000474665 WWC1Q8IX03 1113 aa9.19□□□□□ -0.94
LIMD1-204ENST00000474665 FLAD1Q8NFF5 587 aa9.19□□□□□ -0.94
LIMD1-204ENST00000474665 CFAP44Q96MT7 982 aa9.19□□□□□ -0.94
LIMD1-204ENST00000474665 ZNF521Q96K83 1311 aa9.19□□□□□ -0.94
LIMD1-204ENST00000474665 PALLDQ8WX93 1383 aa9.19□□□□□ -0.94
LIMD1-204ENST00000474665 PXDNLA1KZ92 1463 aa9.19□□□□□ -0.94
LIMD1-204ENST00000474665 PHF14O94880 888 aa9.18□□□□□ -0.94
LIMD1-204ENST00000474665 ZNF853P0CG23 659 aa9.18□□□□□ -0.94
LIMD1-204ENST00000474665 ITPK1Q13572 414 aa9.18□□□□□ -0.94
LIMD1-204ENST00000474665 TAF7Q15545 349 aaPredicted RBP9.18□□□□□ -0.94
LIMD1-204ENST00000474665 CCDC27Q2M243 656 aa9.18□□□□□ -0.94
LIMD1-204ENST00000474665 NCBP3Q53F19 620 aaKnown RBP9.18□□□□□ -0.94
LIMD1-204ENST00000474665 RTF1Q92541 710 aaKnown RBP9.18□□□□□ -0.94
LIMD1-204ENST00000474665 ZNF496Q96IT1 587 aaPredicted RBP9.18□□□□□ -0.94
LIMD1-204ENST00000474665 SPINK5Q9NQ38 1064 aaPredicted RBP9.18□□□□□ -0.94
LIMD1-204ENST00000474665 SALL2Q9Y467 1007 aaPredicted RBP9.18□□□□□ -0.94
LIMD1-204ENST00000474665 TJP1Q07157 1748 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 ZNF831Q5JPB2 1677 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 HEG1Q9ULI3 1381 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 LOC102724428A0A0B4J2F2 783 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 CHL1O00533 1208 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 HSPA8P11142 646 aaKnown RBP9.17□□□□□ -0.94
LIMD1-204ENST00000474665 SIK1P57059 783 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 TEFQ10587 303 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 ZNF790Q6PG37 636 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 CREBZFQ9NS37 354 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 WBP1LQ9NX94 342 aa9.17□□□□□ -0.94
LIMD1-204ENST00000474665 COL5A3P25940 1745 aaPredicted RBP9.17□□□□□ -0.94
LIMD1-204ENST00000474665 BTBD11A6QL63 1104 aa9.16□□□□□ -0.94
LIMD1-204ENST00000474665 PTCD1O75127 700 aaKnown RBP9.16□□□□□ -0.94
LIMD1-204ENST00000474665 VEGFAP15692 232 aaPredicted RBP9.16□□□□□ -0.94
LIMD1-204ENST00000474665 DPEP1P16444 411 aa9.16□□□□□ -0.94
LIMD1-204ENST00000474665 VEGFBP49765 207 aa9.16□□□□□ -0.94
LIMD1-204ENST00000474665 TGFB2P61812 414 aa9.16□□□□□ -0.94
LIMD1-204ENST00000474665 LMOD3Q0VAK6 560 aa9.16□□□□□ -0.94
LIMD1-204ENST00000474665 SMARCC1Q92922 1105 aaPredicted RBP9.16□□□□□ -0.94
LIMD1-204ENST00000474665 N4BP2Q86UW6 1770 aaPredicted RBP9.16□□□□□ -0.94
LIMD1-204ENST00000474665 PRAMEF22A3QJZ6 481 aa9.15□□□□□ -0.94
LIMD1-204ENST00000474665 EIF4A1P60842 406 aaKnown RBP9.15□□□□□ -0.94
LIMD1-204ENST00000474665 KRT24Q2M2I5 525 aa9.15□□□□□ -0.94
LIMD1-204ENST00000474665 LINC00116Q8NCU8 138 aa9.15□□□□□ -0.94
LIMD1-204ENST00000474665 C5P01031 1676 aa9.15□□□□□ -0.94
LIMD1-204ENST00000474665 TNRC6CQ9HCJ0 1690 aaKnown RBP9.15□□□□□ -0.94
LIMD1-204ENST00000474665 CNTNAP1P78357 1384 aa9.14□□□□□ -0.95
LIMD1-204ENST00000474665 DNAJC10Q8IXB1 793 aa9.14□□□□□ -0.95
LIMD1-204ENST00000474665 RBM42Q9BTD8 480 aaKnown RBP9.14□□□□□ -0.95
LIMD1-204ENST00000474665 MBIPQ9NS73 344 aa9.14□□□□□ -0.95
LIMD1-204ENST00000474665 IFT57Q9NWB7 429 aa9.14□□□□□ -0.95
LIMD1-204ENST00000474665 UBR3Q6ZT12 1888 aa9.14□□□□□ -0.95
LIMD1-204ENST00000474665 C4BP0C0L5 1744 aa9.14□□□□□ -0.95
LIMD1-204ENST00000474665 IL16Q14005 1332 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.13□□□□□ -0.95
LIMD1-204ENST00000474665 MMP10P09238 476 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 ATP6V1AP38606 617 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 WDR63Q8IWG1 891 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 NGEFQ8N5V2 710 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 TSR2Q969E8 191 aaKnown RBP9.13□□□□□ -0.95
LIMD1-204ENST00000474665 CDCA7LQ96GN5 454 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 BABAM1Q9NWV8 329 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 TSPYL4Q9UJ04 414 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 KIAA1551Q9HCM1 1747 aa9.13□□□□□ -0.95
LIMD1-204ENST00000474665 POTECB2RU33 542 aa9.12□□□□□ -0.95
LIMD1-204ENST00000474665 CYP19A1P11511 503 aaPredicted RBP9.12□□□□□ -0.95
LIMD1-204ENST00000474665 KCNA3P22001 575 aa9.12□□□□□ -0.95
LIMD1-204ENST00000474665 INTS5Q6P9B9 1019 aaKnown RBP9.12□□□□□ -0.95
LIMD1-204ENST00000474665 TTC5Q8N0Z6 440 aa9.12□□□□□ -0.95
LIMD1-204ENST00000474665 VSIG10Q8N0Z9 540 aa9.12□□□□□ -0.95
LIMD1-204ENST00000474665 AK7Q96M32 723 aa9.12□□□□□ -0.95
LIMD1-204ENST00000474665 FMNL2Q96PY5 1086 aa9.12□□□□□ -0.95
LIMD1-204ENST00000474665 LAS1LQ9Y4W2 734 aaKnown RBP9.12□□□□□ -0.95
LIMD1-204ENST00000474665 USP16Q9Y5T5 823 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms