RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SPTY2D1Q68D10 685 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-210ENST00000473258 USH1CQ9Y6N9 552 aa10.38□□□□□ -0.75
COL6A3-210ENST00000473258 HMGB2P26583 209 aaKnown RBP10.38□□□□□ -0.75
COL6A3-210ENST00000473258 COG7P83436 770 aa10.38□□□□□ -0.75
COL6A3-210ENST00000473258 LRRFIP1Q32MZ4 808 aaKnown RBP10.38□□□□□ -0.75
COL6A3-210ENST00000473258 CALR3Q96L12 384 aaKnown RBP10.38□□□□□ -0.75
COL6A3-210ENST00000473258 CAPN7Q9Y6W3 813 aa10.38□□□□□ -0.75
COL6A3-210ENST00000473258 FRMD3A2A2Y4 597 aa10.38□□□□□ -0.75
COL6A3-210ENST00000473258 GOLGA5Q8TBA6 731 aa10.38□□□□□ -0.75
COL6A3-210ENST00000473258 GSTTP1A0A1W2PQM5 241 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 SKILP12757 684 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 CKAP4Q07065 602 aaKnown RBP10.37□□□□□ -0.75
COL6A3-210ENST00000473258 ZSCAN23Q3MJ62 389 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 SREK1Q8WXA9 508 aaKnown RBP10.37□□□□□ -0.75
COL6A3-210ENST00000473258 ABTB1Q969K4 478 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-210ENST00000473258 MKL2Q9ULH7 1088 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 CAVIN2O95810 425 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 IRX1P78414 480 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-210ENST00000473258 TRDNQ13061 729 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 STIM1Q13586 685 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 N4BP2L2Q92802 583 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-210ENST00000473258 RRP15Q9Y3B9 282 aaKnown RBP10.37□□□□□ -0.75
COL6A3-210ENST00000473258 CCNB3Q8WWL7 1395 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 ZC3H6P61129 1189 aaKnown RBP10.37□□□□□ -0.75
COL6A3-210ENST00000473258 TRIM7Q9C029 511 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 NBPF3Q9H094 633 aa10.37□□□□□ -0.75
COL6A3-210ENST00000473258 ERC2O15083 957 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 ARMC2Q8NEN0 867 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 PPFIA3O75145 1194 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 CCDC186Q7Z3E2 898 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 TBC1D2Q9BYX2 928 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 TAOK3Q9H2K8 898 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 RIOK3O14730 519 aaKnown RBP10.36□□□□□ -0.75
COL6A3-210ENST00000473258 MAP3K7CLP57077 242 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 PSMD2Q13200 908 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 LARP1BQ659C4 914 aaKnown RBP10.36□□□□□ -0.75
COL6A3-210ENST00000473258 CCDC155Q8N6L0 562 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 POLD1P28340 1107 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 CAMK4Q16566 473 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 AMOTQ4VCS5 1084 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 RAB11FIP4Q86YS3 637 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 DCAF11Q8TEB1 546 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 ROCK1Q13464 1354 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 SSFA2P28290 1259 aa10.36□□□□□ -0.75
COL6A3-210ENST00000473258 FSD2A1L4K1 749 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 VPS41P49754 854 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 MVPQ14764 893 aaKnown RBP10.35□□□□□ -0.75
COL6A3-210ENST00000473258 CDK5RAP3Q96JB5 506 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 TMC6Q7Z403 805 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 EFCAB13Q8IY85 973 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 CCDC110Q8TBZ0 833 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 SETD5Q9C0A6 1442 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 LIG3P49916 1009 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 AIMP1Q12904 312 aaKnown RBP10.35□□□□□ -0.75
COL6A3-210ENST00000473258 CCDC129Q6ZRS4 1044 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 PHLDB2Q86SQ0 1253 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 RNF10Q8N5U6 811 aaKnown RBP10.35□□□□□ -0.75
COL6A3-210ENST00000473258 ATG3Q9NT62 314 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 PAIP2BQ9ULR5 123 aaKnown RBP10.35□□□□□ -0.75
COL6A3-210ENST00000473258 RIPOR2Q9Y4F9 1068 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.35□□□□□ -0.75
COL6A3-210ENST00000473258 FAM160A1Q05DH4 1040 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 NEK11Q8NG66 645 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 SUFUQ9UMX1 484 aa10.35□□□□□ -0.75
COL6A3-210ENST00000473258 OAS2P29728 719 aaKnown RBP10.34□□□□□ -0.75
COL6A3-210ENST00000473258 LARSQ9P2J5 1176 aaKnown RBP10.34□□□□□ -0.75
COL6A3-210ENST00000473258 PIP4K2BP78356 416 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 ZBTB16Q05516 673 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 FLIIQ13045 1269 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 CABS1Q96KC9 395 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 CCDC178Q5BJE1 867 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 STMN4Q9H169 189 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-210ENST00000473258 BCL2L12Q9HB09 334 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 CTAGE5O15320 804 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 BAG4O95429 457 aaKnown RBP10.34□□□□□ -0.75
COL6A3-210ENST00000473258 RMDN2Q96LZ7 410 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 SEC62Q99442 399 aaKnown RBP10.34□□□□□ -0.75
COL6A3-210ENST00000473258 RNF216Q9NWF9 866 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-210ENST00000473258 TRIM35Q9UPQ4 493 aa10.34□□□□□ -0.75
COL6A3-210ENST00000473258 HCLS1P14317 486 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-210ENST00000473258 ZNF165P49910 485 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 NLRP5P59047 1200 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 PDCD2Q16342 344 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-210ENST00000473258 GRIPAP1Q4V328 841 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 MMS22LQ6ZRQ5 1243 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 PANK1Q8TE04 598 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 ANAPC4Q9UJX5 808 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 PRR16Q569H4 304 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 RBM26Q5T8P6 1007 aaKnown RBP10.33□□□□□ -0.76
COL6A3-210ENST00000473258 SPATS2Q86XZ4 545 aaKnown RBP10.33□□□□□ -0.76
COL6A3-210ENST00000473258 EHBP1Q8NDI1 1231 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 JPH2Q9BR39 696 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-210ENST00000473258 TACO1Q9BSH4 297 aaKnown RBP10.33□□□□□ -0.76
COL6A3-210ENST00000473258 CA8P35219 290 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 SNCBQ16143 134 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 NFXL1Q6ZNB6 911 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 PUS7Q96PZ0 661 aaKnown RBP10.33□□□□□ -0.76
COL6A3-210ENST00000473258 TSC22D3Q99576 134 aa10.33□□□□□ -0.76
COL6A3-210ENST00000473258 API5Q9BZZ5 524 aaKnown RBP10.33□□□□□ -0.76
COL6A3-210ENST00000473258 HIP1RO75146 1068 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms