RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 MEIS3Q99687 375 aa23.86■■□□□ 1.41
SMC4-209ENST00000468653 BCL9LQ86UU0 1499 aa23.86■■□□□ 1.41
SMC4-209ENST00000468653 LRP6O75581 1613 aa23.86■■□□□ 1.41
SMC4-209ENST00000468653 PXDNLA1KZ92 1463 aa23.86■■□□□ 1.41
SMC4-209ENST00000468653 PDIA6Q15084 440 aa23.86■■□□□ 1.41
SMC4-209ENST00000468653 PIGBQ92521 554 aa23.86■■□□□ 1.41
SMC4-209ENST00000468653 PI4KAP2A4QPH2 592 aa23.85■■□□□ 1.41
SMC4-209ENST00000468653 PI4KAP1Q8N8J0 262 aa23.85■■□□□ 1.41
SMC4-209ENST00000468653 DNAAF4Q8WXU2 420 aa23.85■■□□□ 1.41
SMC4-209ENST00000468653 PTCD1O75127 700 aaKnown RBP23.84■■□□□ 1.41
SMC4-209ENST00000468653 USP21Q9UK80 565 aa23.84■■□□□ 1.41
SMC4-209ENST00000468653 MYL6BP14649 208 aa23.83■■□□□ 1.41
SMC4-209ENST00000468653 PAPPAQ13219 1627 aa23.83■■□□□ 1.41
SMC4-209ENST00000468653 DDX58O95786 925 aaKnown RBP23.83■■□□□ 1.4
SMC4-209ENST00000468653 RGS3P49796 1198 aa23.83■■□□□ 1.4
SMC4-209ENST00000468653 AIMP1Q12904 312 aaKnown RBP23.82■■□□□ 1.4
SMC4-209ENST00000468653 SRCIN1Q9C0H9 1055 aa23.82■■□□□ 1.4
SMC4-209ENST00000468653 PDZRN3Q9UPQ7 1066 aa23.82■■□□□ 1.4
SMC4-209ENST00000468653 KCPQ6ZWJ8 1503 aa23.82■■□□□ 1.4
SMC4-209ENST00000468653 ADCY9O60503 1353 aa23.81■■□□□ 1.4
SMC4-209ENST00000468653 GNAI3P08754 354 aa23.81■■□□□ 1.4
SMC4-209ENST00000468653 FAM98CQ17RN3 349 aaKnown RBP23.81■■□□□ 1.4
SMC4-209ENST00000468653 KSR2Q6VAB6 950 aa23.81■■□□□ 1.4
SMC4-209ENST00000468653 UBR2Q8IWV8 1755 aa23.81■■□□□ 1.4
SMC4-209ENST00000468653 SYTL4Q96C24 671 aaPredicted RBP23.81■■□□□ 1.4
SMC4-209ENST00000468653 SMC5Q8IY18 1101 aa23.8■■□□□ 1.4
SMC4-209ENST00000468653 ASAP1Q9ULH1 1129 aa23.8■■□□□ 1.4
SMC4-209ENST00000468653 SIRT2Q8IXJ6 389 aa23.8■■□□□ 1.4
SMC4-209ENST00000468653 MAP3K2Q9Y2U5 619 aa23.8■■□□□ 1.4
SMC4-209ENST00000468653 GLI3P10071 1580 aa23.79■■□□□ 1.4
SMC4-209ENST00000468653 RPAP2Q8IXW5 612 aaPredicted RBP23.79■■□□□ 1.4
SMC4-209ENST00000468653 MARCH10Q8NA82 808 aaPredicted RBP23.79■■□□□ 1.4
SMC4-209ENST00000468653 ATG3Q9NT62 314 aa23.79■■□□□ 1.4
SMC4-209ENST00000468653 BCL9O00512 1426 aa23.79■■□□□ 1.4
SMC4-209ENST00000468653 GNAI2P04899 355 aa23.78■■□□□ 1.4
SMC4-209ENST00000468653 PRIM1P49642 420 aaKnown RBP23.78■■□□□ 1.4
SMC4-209ENST00000468653 BEND3Q5T5X7 828 aa23.78■■□□□ 1.4
SMC4-209ENST00000468653 ITGB4P16144 1822 aa23.78■■□□□ 1.4
SMC4-209ENST00000468653 ERBB4Q15303 1308 aa23.78■■□□□ 1.4
SMC4-209ENST00000468653 ANKRD44Q8N8A2 993 aa23.78■■□□□ 1.4
SMC4-209ENST00000468653 XAGE3Q8WTP9 111 aa23.78■■□□□ 1.4
SMC4-209ENST00000468653 LAMB4A4D0S4 1761 aa23.78■■□□□ 1.4
SMC4-209ENST00000468653 KAT6BQ8WYB5 2073 aa23.77■■□□□ 1.4
SMC4-209ENST00000468653 N4BP2Q86UW6 1770 aaPredicted RBP23.77■■□□□ 1.4
SMC4-209ENST00000468653 PIP4K2AP48426 406 aaPredicted RBP23.77■■□□□ 1.4
SMC4-209ENST00000468653 CEP85Q6P2H3 762 aa23.77■■□□□ 1.4
SMC4-209ENST00000468653 COPS6Q7L5N1 327 aa23.77■■□□□ 1.4
SMC4-209ENST00000468653 GCC1Q96CN9 775 aa23.77■■□□□ 1.4
SMC4-209ENST00000468653 RIC3Q7Z5B4 369 aa23.76■■□□□ 1.39
SMC4-209ENST00000468653 USP44Q9H0E7 712 aa23.76■■□□□ 1.39
SMC4-209ENST00000468653 ATP10DQ9P241 1426 aa23.76■■□□□ 1.39
SMC4-209ENST00000468653 A0A0G2JS52 829 aa23.75■■□□□ 1.39
SMC4-209ENST00000468653 MYT1Q01538 1121 aa23.75■■□□□ 1.39
SMC4-209ENST00000468653 RBM42Q9BTD8 480 aaKnown RBP23.75■■□□□ 1.39
SMC4-209ENST00000468653 UBTFL1P0CB47 393 aaPredicted RBP23.75■■□□□ 1.39
SMC4-209ENST00000468653 LRP10Q7Z4F1 713 aa23.75■■□□□ 1.39
SMC4-209ENST00000468653 VSIG10Q8N0Z9 540 aa23.75■■□□□ 1.39
SMC4-209ENST00000468653 TEX13AQ9BXU3 409 aaPredicted RBP23.75■■□□□ 1.39
SMC4-209ENST00000468653 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.74■■□□□ 1.39
SMC4-209ENST00000468653 AFF2P51816 1311 aa23.74■■□□□ 1.39
SMC4-209ENST00000468653 ALDH1L1O75891 902 aa23.73■■□□□ 1.39
SMC4-209ENST00000468653 DOT1LQ8TEK3 1739 aa23.73■■□□□ 1.39
SMC4-209ENST00000468653 HMMRO75330 724 aa23.73■■□□□ 1.39
SMC4-209ENST00000468653 A1BGP04217 495 aa23.73■■□□□ 1.39
SMC4-209ENST00000468653 ACSBG1Q96GR2 724 aa23.73■■□□□ 1.39
SMC4-209ENST00000468653 NBPF26B4DH59 902 aa23.72■■□□□ 1.39
SMC4-209ENST00000468653 NBPF14Q5TI25 921 aa23.72■■□□□ 1.39
SMC4-209ENST00000468653 NBPF10Q6P3W6 841 aaKnown RBP23.72■■□□□ 1.39
SMC4-209ENST00000468653 ANKRD13DQ6ZTN6 518 aa23.72■■□□□ 1.39
SMC4-209ENST00000468653 NBPF15Q8N660 670 aa23.72■■□□□ 1.39
SMC4-209ENST00000468653 NUCB1Q02818 461 aa23.71■■□□□ 1.39
SMC4-209ENST00000468653 NEXNQ0ZGT2 675 aa23.71■■□□□ 1.39
SMC4-209ENST00000468653 LINS1Q8NG48 757 aa23.71■■□□□ 1.39
SMC4-209ENST00000468653 DNAJC10Q8IXB1 793 aa23.7■■□□□ 1.39
SMC4-209ENST00000468653 LRRFIP2Q9Y608 721 aaKnown RBP23.7■■□□□ 1.39
SMC4-209ENST00000468653 STARD3NLO95772 234 aa23.7■■□□□ 1.38
SMC4-209ENST00000468653 ANKRD45Q5TZF3 282 aa23.7■■□□□ 1.38
SMC4-209ENST00000468653 DCTPP1Q9H773 170 aa23.7■■□□□ 1.38
SMC4-209ENST00000468653 RBM19Q9Y4C8 960 aaKnown RBP23.7■■□□□ 1.38
SMC4-209ENST00000468653 GJD4Q96KN9 370 aaPredicted RBP23.69■■□□□ 1.38
SMC4-209ENST00000468653 C9orf78Q9NZ63 289 aaPredicted RBP23.69■■□□□ 1.38
SMC4-209ENST00000468653 CWF19L2Q2TBE0 894 aaKnown RBP23.68■■□□□ 1.38
SMC4-209ENST00000468653 CHD1LQ86WJ1 897 aa23.68■■□□□ 1.38
SMC4-209ENST00000468653 METTL22Q9BUU2 404 aaPredicted RBP23.68■■□□□ 1.38
SMC4-209ENST00000468653 PDE4AP27815 886 aa23.68■■□□□ 1.38
SMC4-209ENST00000468653 PLBD2Q8NHP8 589 aa23.68■■□□□ 1.38
SMC4-209ENST00000468653 NBPF7P0C2Y1 421 aaPredicted RBP23.67■■□□□ 1.38
SMC4-209ENST00000468653 ATP8B2P98198 1209 aa23.67■■□□□ 1.38
SMC4-209ENST00000468653 LNPKQ9C0E8 428 aa23.67■■□□□ 1.38
SMC4-209ENST00000468653 TRPC5Q9UL62 973 aaPredicted RBP23.67■■□□□ 1.38
SMC4-209ENST00000468653 MYD88Q99836 296 aa23.66■■□□□ 1.38
SMC4-209ENST00000468653 HDAC5Q9UQL6 1122 aa23.66■■□□□ 1.38
SMC4-209ENST00000468653 ZBTB47Q9UFB7 747 aaPredicted RBP23.65■■□□□ 1.38
SMC4-209ENST00000468653 IGKV5-2P06315 115 aa23.64■■□□□ 1.37
SMC4-209ENST00000468653 SLC4A9Q96Q91 983 aa23.64■■□□□ 1.37
SMC4-209ENST00000468653 BACH2Q9BYV9 841 aa23.64■■□□□ 1.37
SMC4-209ENST00000468653 NEURL1BA8MQ27 555 aa23.63■■□□□ 1.37
SMC4-209ENST00000468653 TTLL7Q6ZT98 887 aa23.63■■□□□ 1.37
SMC4-209ENST00000468653 ATRNO75882 1429 aa23.63■■□□□ 1.37
SMC4-209ENST00000468653 PNMA6EA0A0J9YXQ4 647 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms