RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 MAP3K5Q99683 1374 aa11.51□□□□□ -0.57
COL28A1-205ENST00000453441 DOT1LQ8TEK3 1739 aa11.5□□□□□ -0.57
COL28A1-205ENST00000453441 RGPD3A6NKT7 1758 aaPredicted RBP11.5□□□□□ -0.57
COL28A1-205ENST00000453441 RGPD4Q7Z3J3 1758 aa11.5□□□□□ -0.57
COL28A1-205ENST00000453441 GNAT3A8MTJ3 354 aa11.5□□□□□ -0.57
COL28A1-205ENST00000453441 ERVV-2B6SEH9 535 aa11.5□□□□□ -0.57
COL28A1-205ENST00000453441 SOCS7O14512 581 aa11.5□□□□□ -0.57
COL28A1-205ENST00000453441 HMGB2P26583 209 aaKnown RBP11.5□□□□□ -0.57
COL28A1-205ENST00000453441 MTHFSDQ2M296 383 aaKnown RBP11.5□□□□□ -0.57
COL28A1-205ENST00000453441 RUNDC1Q96C34 613 aa11.5□□□□□ -0.57
COL28A1-205ENST00000453441 PLEKHF1Q96S99 279 aa11.5□□□□□ -0.57
COL28A1-205ENST00000453441 ADAMTS8Q9UP79 889 aa11.5□□□□□ -0.57
COL28A1-205ENST00000453441 ADAMTS7Q9UKP4 1686 aa11.49□□□□□ -0.57
COL28A1-205ENST00000453441 TNS1Q9HBL0 1735 aaKnown RBP11.49□□□□□ -0.57
COL28A1-205ENST00000453441 EP400Q96L91 3159 aa11.49□□□□□ -0.57
COL28A1-205ENST00000453441 SCN11AQ9UI33 1791 aa11.49□□□□□ -0.57
COL28A1-205ENST00000453441 KIF3CO14782 793 aa11.49□□□□□ -0.57
COL28A1-205ENST00000453441 LMOD3Q0VAK6 560 aa11.49□□□□□ -0.57
COL28A1-205ENST00000453441 SPRYD3Q8NCJ5 442 aa11.49□□□□□ -0.57
COL28A1-205ENST00000453441 TMC2Q8TDI7 906 aa11.49□□□□□ -0.57
COL28A1-205ENST00000453441 TRIM37O94972 964 aa11.48□□□□□ -0.57
COL28A1-205ENST00000453441 BAG6P46379 1132 aa11.48□□□□□ -0.57
COL28A1-205ENST00000453441 NFE2L2Q16236 605 aa11.48□□□□□ -0.57
COL28A1-205ENST00000453441 FAM182BQ5T319 152 aa11.48□□□□□ -0.57
COL28A1-205ENST00000453441 RTF1Q92541 710 aaKnown RBP11.48□□□□□ -0.57
COL28A1-205ENST00000453441 UPF1Q92900 1129 aaKnown RBP eCLIP11.48□□□□□ -0.57
COL28A1-205ENST00000453441 PHACTR3Q96KR7 559 aa11.48□□□□□ -0.57
COL28A1-205ENST00000453441 TOGARAM1Q9Y4F4 1720 aa11.47□□□□□ -0.57
COL28A1-205ENST00000453441 MRC1P22897 1456 aa11.47□□□□□ -0.57
COL28A1-205ENST00000453441 KDM6AO15550 1401 aaPredicted RBP11.47□□□□□ -0.57
COL28A1-205ENST00000453441 C2orf72A6NCS6 295 aa11.47□□□□□ -0.57
COL28A1-205ENST00000453441 CCDC184Q52MB2 194 aa11.47□□□□□ -0.57
COL28A1-205ENST00000453441 NGEFQ8N5V2 710 aa11.47□□□□□ -0.57
COL28A1-205ENST00000453441 ITGB4P16144 1822 aa11.46□□□□□ -0.57
COL28A1-205ENST00000453441 VIRMAQ69YN4 1812 aaKnown RBP11.46□□□□□ -0.57
COL28A1-205ENST00000453441 PLSCR1O15162 318 aa11.46□□□□□ -0.57
COL28A1-205ENST00000453441 PRIM1P49642 420 aaKnown RBP11.46□□□□□ -0.57
COL28A1-205ENST00000453441 DOK7Q18PE1 504 aa11.46□□□□□ -0.57
COL28A1-205ENST00000453441 SMARCC1Q92922 1105 aaPredicted RBP11.46□□□□□ -0.57
COL28A1-205ENST00000453441 TMOD3Q9NYL9 352 aa11.46□□□□□ -0.57
COL28A1-205ENST00000453441 BTAF1O14981 1849 aa11.46□□□□□ -0.58
COL28A1-205ENST00000453441 DLG5Q8TDM6 1919 aa11.45□□□□□ -0.58
COL28A1-205ENST00000453441 CEMIPQ8WUJ3 1361 aa11.45□□□□□ -0.58
COL28A1-205ENST00000453441 RNMTO43148 476 aaKnown RBP11.45□□□□□ -0.58
COL28A1-205ENST00000453441 CABP4P57796 275 aa11.45□□□□□ -0.58
COL28A1-205ENST00000453441 MPRIPQ6WCQ1 1025 aa11.45□□□□□ -0.58
COL28A1-205ENST00000453441 SYTL4Q96C24 671 aaPredicted RBP11.45□□□□□ -0.58
COL28A1-205ENST00000453441 ACSBG1Q96GR2 724 aa11.45□□□□□ -0.58
COL28A1-205ENST00000453441 ST18O60284 1047 aa11.44□□□□□ -0.58
COL28A1-205ENST00000453441 APBA3O96018 575 aa11.44□□□□□ -0.58
COL28A1-205ENST00000453441 TMPOP42166 694 aaKnown RBP11.44□□□□□ -0.58
COL28A1-205ENST00000453441 TEFQ10587 303 aa11.44□□□□□ -0.58
COL28A1-205ENST00000453441 LCE2DQ5TA82 110 aaPredicted RBP11.44□□□□□ -0.58
COL28A1-205ENST00000453441 SLC52A2Q9HAB3 445 aa11.44□□□□□ -0.58
COL28A1-205ENST00000453441 RIMBP2O15034 1052 aa11.43□□□□□ -0.58
COL28A1-205ENST00000453441 KCNQ2O43526 872 aa11.43□□□□□ -0.58
COL28A1-205ENST00000453441 HOXB3P14651 431 aaPredicted RBP11.43□□□□□ -0.58
COL28A1-205ENST00000453441 RIPK4P57078 832 aa11.43□□□□□ -0.58
COL28A1-205ENST00000453441 CALD1Q05682 793 aaKnown RBP11.43□□□□□ -0.58
COL28A1-205ENST00000453441 CCDC146Q8IYE0 955 aa11.43□□□□□ -0.58
COL28A1-205ENST00000453441 GPHNQ9NQX3 736 aaPredicted RBP11.43□□□□□ -0.58
COL28A1-205ENST00000453441 CCDC27Q2M243 656 aa11.42□□□□□ -0.58
COL28A1-205ENST00000453441 SLC27A3Q5K4L6 730 aa11.42□□□□□ -0.58
COL28A1-205ENST00000453441 FAM9BQ8IZU0 186 aa11.42□□□□□ -0.58
COL28A1-205ENST00000453441 IL17REQ8NFR9 667 aa11.42□□□□□ -0.58
COL28A1-205ENST00000453441 PIGBQ92521 554 aa11.42□□□□□ -0.58
COL28A1-205ENST00000453441 BABAM1Q9NWV8 329 aa11.42□□□□□ -0.58
COL28A1-205ENST00000453441 SIPA1L3O60292 1781 aaPredicted RBP11.41□□□□□ -0.58
COL28A1-205ENST00000453441 LY75O60449 1722 aa11.41□□□□□ -0.58
COL28A1-205ENST00000453441 ZNF831Q5JPB2 1677 aa11.41□□□□□ -0.58
COL28A1-205ENST00000453441 PAXIP1Q6ZW49 1069 aaPredicted RBP11.41□□□□□ -0.58
COL28A1-205ENST00000453441 NFATC2IPQ8NCF5 419 aa11.41□□□□□ -0.58
COL28A1-205ENST00000453441 LGR6Q9HBX8 967 aa11.41□□□□□ -0.58
COL28A1-205ENST00000453441 PALLDQ8WX93 1383 aa11.41□□□□□ -0.58
COL28A1-205ENST00000453441 RREB1Q92766 1687 aa11.4□□□□□ -0.58
COL28A1-205ENST00000453441 PAPPAQ13219 1627 aa11.4□□□□□ -0.58
COL28A1-205ENST00000453441 APAF1O14727 1248 aa11.4□□□□□ -0.58
COL28A1-205ENST00000453441 PDE4AP27815 886 aa11.4□□□□□ -0.58
COL28A1-205ENST00000453441 ZNF710Q8N1W2 664 aa11.4□□□□□ -0.58
COL28A1-205ENST00000453441 CAMKK2Q96RR4 588 aa11.4□□□□□ -0.58
COL28A1-205ENST00000453441 ZSWIM6Q9HCJ5 1215 aa11.4□□□□□ -0.58
COL28A1-205ENST00000453441 FOXK1P85037 733 aa11.39□□□□□ -0.59
COL28A1-205ENST00000453441 TAF7Q15545 349 aaPredicted RBP11.39□□□□□ -0.59
COL28A1-205ENST00000453441 TTC5Q8N0Z6 440 aa11.39□□□□□ -0.59
COL28A1-205ENST00000453441 CRISPLD2Q9H0B8 497 aa11.39□□□□□ -0.59
COL28A1-205ENST00000453441 ATG3Q9NT62 314 aa11.39□□□□□ -0.59
COL28A1-205ENST00000453441 CICQ96RK0 1608 aaPredicted RBP11.38□□□□□ -0.59
COL28A1-205ENST00000453441 EN1Q05925 392 aaPredicted RBP11.38□□□□□ -0.59
COL28A1-205ENST00000453441 TXNRD1Q16881 649 aa11.38□□□□□ -0.59
COL28A1-205ENST00000453441 MCM10Q7L590 875 aa11.38□□□□□ -0.59
COL28A1-205ENST00000453441 PTF1AQ7RTS3 328 aa11.38□□□□□ -0.59
COL28A1-205ENST00000453441 DEFB132Q7Z7B7 95 aa11.38□□□□□ -0.59
COL28A1-205ENST00000453441 CFAP44Q96MT7 982 aa11.38□□□□□ -0.59
COL28A1-205ENST00000453441 UBR2Q8IWV8 1755 aa11.37□□□□□ -0.59
COL28A1-205ENST00000453441 BTBD11A6QL63 1104 aa11.37□□□□□ -0.59
COL28A1-205ENST00000453441 NEUROD2Q15784 382 aa11.37□□□□□ -0.59
COL28A1-205ENST00000453441 VSIG10Q8N0Z9 540 aa11.37□□□□□ -0.59
COL28A1-205ENST00000453441 PLSCR2Q9NRY7 297 aa11.37□□□□□ -0.59
COL28A1-205ENST00000453441 RRP7AQ9Y3A4 280 aaKnown RBP11.37□□□□□ -0.59
COL28A1-205ENST00000453441 IL16Q14005 1332 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms