RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 EIF4A2Q14240 407 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-204ENST00000446625 USPL1Q5W0Q7 1092 aa10.8□□□□□ -0.68
LIMCH1-204ENST00000446625 TTLL6Q8N841 843 aa10.8□□□□□ -0.68
LIMCH1-204ENST00000446625 FER1L6Q2WGJ9 1857 aa10.8□□□□□ -0.68
LIMCH1-204ENST00000446625 ZPR1O75312 459 aa10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 POTEIP0CG38 1075 aa10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 POTEJP0CG39 1038 aa10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 NFIXQ14938 502 aa10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 CHADLQ6NUI6 762 aa10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 DPY19L2Q6NUT2 758 aa10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 ZNF530Q6P9A1 599 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 NFATC2IPQ8NCF5 419 aa10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 VIRMAQ69YN4 1812 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-204ENST00000446625 CTCFP49711 727 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-204ENST00000446625 MTHFSP49914 203 aa10.78□□□□□ -0.68
LIMCH1-204ENST00000446625 PLEKHO1Q53GL0 409 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-204ENST00000446625 C2CD5Q86YS7 1000 aa10.78□□□□□ -0.68
LIMCH1-204ENST00000446625 CNTNAP1P78357 1384 aa10.77□□□□□ -0.68
LIMCH1-204ENST00000446625 SCN11AQ9UI33 1791 aa10.77□□□□□ -0.68
LIMCH1-204ENST00000446625 ANKRD31Q8N7Z5 1873 aa10.77□□□□□ -0.69
LIMCH1-204ENST00000446625 SERPINB2P05120 415 aa10.77□□□□□ -0.69
LIMCH1-204ENST00000446625 DNAJC10Q8IXB1 793 aa10.77□□□□□ -0.69
LIMCH1-204ENST00000446625 SOS1Q07889 1333 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-204ENST00000446625 CARMIL3Q8ND23 1372 aa10.77□□□□□ -0.69
LIMCH1-204ENST00000446625 H0YIN7 160 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 VEGFBP49765 207 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 LBX1P52954 281 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 FAM161AQ3B820 660 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 ERFEQ4G0M1 354 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 CDCA8Q53HL2 280 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 AIDAQ96BJ3 306 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 BCL2L12Q9HB09 334 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 NARFQ9UHQ1 456 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 PDE4DIPQ5VU43 2346 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 CACNA1SQ13698 1873 aa10.76□□□□□ -0.69
LIMCH1-204ENST00000446625 DDNO94850 711 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-204ENST00000446625 TNNT2P45379 298 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-204ENST00000446625 AMOTQ4VCS5 1084 aa10.75□□□□□ -0.69
LIMCH1-204ENST00000446625 ABHD8Q96I13 439 aa10.75□□□□□ -0.69
LIMCH1-204ENST00000446625 WBP1LQ9NX94 342 aa10.75□□□□□ -0.69
LIMCH1-204ENST00000446625 ZNF219Q9P2Y4 722 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-204ENST00000446625 PASKQ96RG2 1323 aa10.75□□□□□ -0.69
LIMCH1-204ENST00000446625 SCN4AP35499 1836 aa10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 C21orf2O43822 256 aa10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 CYP19A1P11511 503 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 C1orf141Q5JVX7 400 aa10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 AEBP1Q8IUX7 1158 aa10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 ZNF622Q969S3 477 aaKnown RBP eCLIP10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 COL11A2P13942 1736 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 SLX4Q8IY92 1834 aa10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 COL15A1P39059 1388 aa10.74□□□□□ -0.69
LIMCH1-204ENST00000446625 ZBTB1Q9Y2K1 713 aa10.73□□□□□ -0.69
LIMCH1-204ENST00000446625 TMEM88BA6NKF7 163 aa10.72□□□□□ -0.69
LIMCH1-204ENST00000446625 ITGBL1O95965 494 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-204ENST00000446625 HSPA8P11142 646 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-204ENST00000446625 BICDL1Q6ZP65 573 aa10.72□□□□□ -0.69
LIMCH1-204ENST00000446625 LDHDQ86WU2 507 aa10.72□□□□□ -0.69
LIMCH1-204ENST00000446625 TAOK3Q9H2K8 898 aa10.72□□□□□ -0.69
LIMCH1-204ENST00000446625 SLC39A6Q13433 755 aa10.71□□□□□ -0.69
LIMCH1-204ENST00000446625 CCDC24Q8N4L8 307 aa10.71□□□□□ -0.69
LIMCH1-204ENST00000446625 TAF1DQ9H5J8 278 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-204ENST00000446625 LTBP3Q9NS15 1303 aa10.71□□□□□ -0.69
LIMCH1-204ENST00000446625 PCDH10Q9P2E7 1040 aa10.71□□□□□ -0.69
LIMCH1-204ENST00000446625 IQCA1LA6NCM1 817 aa10.7□□□□□ -0.7
LIMCH1-204ENST00000446625 POTEDQ86YR6 584 aa10.7□□□□□ -0.7
LIMCH1-204ENST00000446625 SLC52A2Q9HAB3 445 aa10.7□□□□□ -0.7
LIMCH1-204ENST00000446625 CANXP27824 592 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 PDE6BP35913 854 aa10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 MLLT1Q03111 559 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 TBC1D9BQ66K14 1250 aa10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 SULT6B1Q6IMI4 303 aa10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 PRR5LQ6MZQ0 368 aa10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 L3MBTL3Q96JM7 780 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 BRIP1Q9BX63 1249 aa10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 LGR6Q9HBX8 967 aa10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 PDZRN3Q9UPQ7 1066 aa10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 ARFGEF2Q9Y6D5 1785 aa10.69□□□□□ -0.7
LIMCH1-204ENST00000446625 ADAMTSL1Q8N6G6 1762 aa10.68□□□□□ -0.7
LIMCH1-204ENST00000446625 RASSF10A6NK89 507 aa10.68□□□□□ -0.7
LIMCH1-204ENST00000446625 CCDC85CA6NKD9 419 aa10.68□□□□□ -0.7
LIMCH1-204ENST00000446625 RGS19P49795 217 aa10.68□□□□□ -0.7
LIMCH1-204ENST00000446625 DEFB115Q30KQ5 88 aa10.68□□□□□ -0.7
LIMCH1-204ENST00000446625 EAPPQ56P03 285 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-204ENST00000446625 CLEC11AQ9Y240 323 aa10.68□□□□□ -0.7
LIMCH1-204ENST00000446625 CASP8AP2Q9UKL3 1982 aa10.68□□□□□ -0.7
LIMCH1-204ENST00000446625 UBR2Q8IWV8 1755 aa10.67□□□□□ -0.7
LIMCH1-204ENST00000446625 WDR33Q9C0J8 1336 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-204ENST00000446625 EIF5P55010 431 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-204ENST00000446625 MAP2K1Q02750 393 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-204ENST00000446625 AKAP4Q5JQC9 854 aa10.67□□□□□ -0.7
LIMCH1-204ENST00000446625 PRPF40BQ6NWY9 871 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-204ENST00000446625 CNKSR1Q969H4 720 aa10.67□□□□□ -0.7
LIMCH1-204ENST00000446625 MRC1P22897 1456 aa10.67□□□□□ -0.7
LIMCH1-204ENST00000446625 SCN7AQ01118 1682 aa10.66□□□□□ -0.7
LIMCH1-204ENST00000446625 ZNF541Q9H0D2 1346 aa10.66□□□□□ -0.7
LIMCH1-204ENST00000446625 A0A087WZG4 1122 aa10.66□□□□□ -0.7
LIMCH1-204ENST00000446625 RNMTO43148 476 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-204ENST00000446625 MAP1SQ66K74 1059 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-204ENST00000446625 STYK1Q6J9G0 422 aa10.66□□□□□ -0.7
LIMCH1-204ENST00000446625 VSIG10Q8N0Z9 540 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms