RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 PPP1R1BQ9UD71 204 aaPredicted RBP14.61□□□□□ -0.07
TCOF1-205ENST00000439160 AIDAQ96BJ3 306 aa14.61□□□□□ -0.07
TCOF1-205ENST00000439160 SNRKQ9NRH2 765 aa14.61□□□□□ -0.07
TCOF1-205ENST00000439160 ZBTB40Q9NUA8 1239 aa14.61□□□□□ -0.07
TCOF1-205ENST00000439160 ZFYVE16Q7Z3T8 1539 aa14.6□□□□□ -0.07
TCOF1-205ENST00000439160 ZPR1O75312 459 aa14.6□□□□□ -0.07
TCOF1-205ENST00000439160 SLC3A2P08195 630 aaKnown RBP14.6□□□□□ -0.07
TCOF1-205ENST00000439160 STK38Q15208 465 aa14.6□□□□□ -0.07
TCOF1-205ENST00000439160 FERMT3Q86UX7 667 aa14.6□□□□□ -0.07
TCOF1-205ENST00000439160 BRMS1Q9HCU9 246 aa14.6□□□□□ -0.07
TCOF1-205ENST00000439160 CTDP1Q9Y5B0 961 aaPredicted RBP14.6□□□□□ -0.07
TCOF1-205ENST00000439160 HSP90AB3PQ58FF7 597 aa14.6□□□□□ -0.07
TCOF1-205ENST00000439160 KINO60870 393 aaKnown RBP14.6□□□□□ -0.07
TCOF1-205ENST00000439160 LDHAL6AQ6ZMR3 332 aa14.6□□□□□ -0.07
TCOF1-205ENST00000439160 CCDC83Q8IWF9 413 aa14.6□□□□□ -0.07
TCOF1-205ENST00000439160 SDSP20132 328 aa14.59□□□□□ -0.07
TCOF1-205ENST00000439160 PHAXQ9H814 394 aaKnown RBP14.59□□□□□ -0.07
TCOF1-205ENST00000439160 MAP3K5Q99683 1374 aa14.59□□□□□ -0.07
TCOF1-205ENST00000439160 KSR2Q6VAB6 950 aa14.59□□□□□ -0.07
TCOF1-205ENST00000439160 G2E3Q7L622 706 aa14.59□□□□□ -0.07
TCOF1-205ENST00000439160 IKQ13123 557 aaPredicted RBP14.59□□□□□ -0.07
TCOF1-205ENST00000439160 ZSCAN31Q96LW9 406 aaPredicted RBP14.59□□□□□ -0.07
TCOF1-205ENST00000439160 TEX13AQ9BXU3 409 aaPredicted RBP14.59□□□□□ -0.07
TCOF1-205ENST00000439160 DDX17Q92841 729 aaKnown RBP14.59□□□□□ -0.07
TCOF1-205ENST00000439160 TBC1D32Q96NH3 1257 aa14.59□□□□□ -0.07
TCOF1-205ENST00000439160 KRT85P78386 507 aa14.58□□□□□ -0.07
TCOF1-205ENST00000439160 CWF19L2Q2TBE0 894 aaKnown RBP14.58□□□□□ -0.07
TCOF1-205ENST00000439160 MAGI2Q86UL8 1455 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 ANKRD18BA2A2Z9 1011 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 GRM8O00222 908 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 TPM3P06753 285 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 ACSBG1Q96GR2 724 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 GOLIM4O00461 696 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 PDE1AP54750 535 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 ATP2B2Q01814 1243 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 IMMTQ16891 758 aaKnown RBP14.58□□□□□ -0.08
TCOF1-205ENST00000439160 PLEKHG3A1L390 1219 aa14.58□□□□□ -0.08
TCOF1-205ENST00000439160 TSR1Q2NL82 804 aaKnown RBP14.58□□□□□ -0.08
TCOF1-205ENST00000439160 PLA2R1Q13018 1463 aa14.57□□□□□ -0.08
TCOF1-205ENST00000439160 CCDC69A6NI79 296 aa14.57□□□□□ -0.08
TCOF1-205ENST00000439160 TRIM22Q8IYM9 498 aa14.57□□□□□ -0.08
TCOF1-205ENST00000439160 ZNF592Q92610 1267 aa14.57□□□□□ -0.08
TCOF1-205ENST00000439160 ME1P48163 572 aa14.57□□□□□ -0.08
TCOF1-205ENST00000439160 ATP8B2P98198 1209 aa14.57□□□□□ -0.08
TCOF1-205ENST00000439160 PA2G4Q9UQ80 394 aaKnown RBP14.57□□□□□ -0.08
TCOF1-205ENST00000439160 U3KPZ7 1027 aaPredicted RBP14.57□□□□□ -0.08
TCOF1-205ENST00000439160 CCDC47Q96A33 483 aaKnown RBP14.57□□□□□ -0.08
TCOF1-205ENST00000439160 METP08581 1390 aa14.57□□□□□ -0.08
TCOF1-205ENST00000439160 TPM1P09493 284 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 IL2RBP14784 551 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 CEP85Q6P2H3 762 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 EVI5LQ96CN4 794 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 ZNF396Q96N95 335 aaPredicted RBP14.56□□□□□ -0.08
TCOF1-205ENST00000439160 ZCCHC11Q5TAX3 1644 aaKnown RBP14.56□□□□□ -0.08
TCOF1-205ENST00000439160 SBNO1A3KN83 1393 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 LMBR1LQ6UX01 489 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 UBAC1Q9BSL1 405 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 MLH3Q9UHC1 1453 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 PREX2Q70Z35 1606 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 LGR6Q9HBX8 967 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 SBNO2Q9Y2G9 1366 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 UBAP1LF5GYI3 381 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 RNMTO43148 476 aaKnown RBP14.56□□□□□ -0.08
TCOF1-205ENST00000439160 C8orf34Q49A92 452 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 LINS1Q8NG48 757 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 TCEAL9Q9UHQ7 104 aa14.56□□□□□ -0.08
TCOF1-205ENST00000439160 PCMTD1Q96MG8 357 aaPredicted RBP14.55□□□□□ -0.08
TCOF1-205ENST00000439160 ALDH1L1O75891 902 aa14.55□□□□□ -0.08
TCOF1-205ENST00000439160 SMC5Q8IY18 1101 aa14.55□□□□□ -0.08
TCOF1-205ENST00000439160 DCTPP1Q9H773 170 aa14.55□□□□□ -0.08
TCOF1-205ENST00000439160 MINDY4BA8MYZ0 360 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 CHL1O00533 1208 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 ZBTB7BO15156 539 aaPredicted RBP14.54□□□□□ -0.08
TCOF1-205ENST00000439160 SF3B2Q13435 895 aaKnown RBP14.54□□□□□ -0.08
TCOF1-205ENST00000439160 NCBP3Q53F19 620 aaKnown RBP14.54□□□□□ -0.08
TCOF1-205ENST00000439160 NBPF6Q5VWK0 638 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 DDX46Q7L014 1031 aaKnown RBP14.54□□□□□ -0.08
TCOF1-205ENST00000439160 ANKRD20A12PQ8NF67 263 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 NBPF4Q96M43 638 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 TSPY26PQ9H489 355 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 CAVIN4Q5BKX8 364 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 DCAF5Q96JK2 942 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 SSFA2P28290 1259 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 MPNDQ8N594 471 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 TRIM5Q9C035 493 aa14.54□□□□□ -0.08
TCOF1-205ENST00000439160 TPM2P07951 284 aa14.53□□□□□ -0.08
TCOF1-205ENST00000439160 PIBF1Q8WXW3 757 aa14.53□□□□□ -0.08
TCOF1-205ENST00000439160 CCAR2Q8N163 923 aaKnown RBP14.53□□□□□ -0.08
TCOF1-205ENST00000439160 SPATA32Q96LK8 384 aa14.53□□□□□ -0.08
TCOF1-205ENST00000439160 TOM1O60784 492 aa14.53□□□□□ -0.08
TCOF1-205ENST00000439160 RBM5P52756 815 aaKnown RBP eCLIP14.53□□□□□ -0.08
TCOF1-205ENST00000439160 NAPBQ9H115 298 aa14.53□□□□□ -0.08
TCOF1-205ENST00000439160 ERVK-7P63135 1459 aa14.53□□□□□ -0.08
TCOF1-205ENST00000439160 DDB1Q16531 1140 aa14.53□□□□□ -0.08
TCOF1-205ENST00000439160 ANKIB1Q9P2G1 1089 aa14.53□□□□□ -0.08
TCOF1-205ENST00000439160 MAP3K12Q12852 859 aa14.52□□□□□ -0.08
TCOF1-205ENST00000439160 NAT10Q9H0A0 1025 aaKnown RBP14.52□□□□□ -0.08
TCOF1-205ENST00000439160 SLC5A1P13866 664 aa14.52□□□□□ -0.09
TCOF1-205ENST00000439160 LIMCH1Q9UPQ0 1083 aa14.52□□□□□ -0.09
TCOF1-205ENST00000439160 PDE4CQ08493 712 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms