RNA–Protein interactions for RNA: ENST00000424011.6

CMTM3-202, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CMTM3, Length 2,330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-202ENST00000424011 CYP27B1O15528 508 aa20.52■□□□□ 0.88
CMTM3-202ENST00000424011 HYPKQ9NX55 129 aa20.52■□□□□ 0.88
CMTM3-202ENST00000424011 MRC1P22897 1456 aa20.52■□□□□ 0.87
CMTM3-202ENST00000424011 MFAP1P55081 439 aaKnown RBP20.52■□□□□ 0.87
CMTM3-202ENST00000424011 NFATC2IPQ8NCF5 419 aa20.52■□□□□ 0.87
CMTM3-202ENST00000424011 DNAAF4Q8WXU2 420 aa20.52■□□□□ 0.87
CMTM3-202ENST00000424011 N4BP2Q86UW6 1770 aaPredicted RBP20.51■□□□□ 0.87
CMTM3-202ENST00000424011 SCN11AQ9UI33 1791 aa20.51■□□□□ 0.87
CMTM3-202ENST00000424011 PCDH11XQ9BZA7 1347 aa20.51■□□□□ 0.87
CMTM3-202ENST00000424011 PCDH11YQ9BZA8 1340 aa20.51■□□□□ 0.87
CMTM3-202ENST00000424011 UBTFL1P0CB47 393 aaPredicted RBP20.5■□□□□ 0.87
CMTM3-202ENST00000424011 COL14A1Q05707 1796 aaKnown RBP20.5■□□□□ 0.87
CMTM3-202ENST00000424011 PI4KAP2A4QPH2 592 aa20.49■□□□□ 0.87
CMTM3-202ENST00000424011 TTC5Q8N0Z6 440 aa20.49■□□□□ 0.87
CMTM3-202ENST00000424011 PI4KAP1Q8N8J0 262 aa20.49■□□□□ 0.87
CMTM3-202ENST00000424011 ZCRB1Q8TBF4 217 aaKnown RBP20.49■□□□□ 0.87
CMTM3-202ENST00000424011 USP44Q9H0E7 712 aa20.49■□□□□ 0.87
CMTM3-202ENST00000424011 PARP4Q9UKK3 1724 aaKnown RBP20.49■□□□□ 0.87
CMTM3-202ENST00000424011 ADAMTS2O95450 1211 aa20.48■□□□□ 0.87
CMTM3-202ENST00000424011 IL2RBP14784 551 aa20.48■□□□□ 0.87
CMTM3-202ENST00000424011 CABP4P57796 275 aa20.48■□□□□ 0.87
CMTM3-202ENST00000424011 ATP8B2P98198 1209 aa20.48■□□□□ 0.87
CMTM3-202ENST00000424011 BECN1Q14457 450 aa20.48■□□□□ 0.87
CMTM3-202ENST00000424011 DDX21Q9NR30 783 aaKnown RBP eCLIP20.48■□□□□ 0.87
CMTM3-202ENST00000424011 DDX58O95786 925 aaKnown RBP20.48■□□□□ 0.87
CMTM3-202ENST00000424011 BEND3Q5T5X7 828 aa20.48■□□□□ 0.87
CMTM3-202ENST00000424011 C22orf23Q9BZE7 217 aa20.48■□□□□ 0.87
CMTM3-202ENST00000424011 HDAC5Q9UQL6 1122 aa20.47■□□□□ 0.87
CMTM3-202ENST00000424011 SLC39A6Q13433 755 aa20.46■□□□□ 0.87
CMTM3-202ENST00000424011 KSR2Q6VAB6 950 aa20.46■□□□□ 0.87
CMTM3-202ENST00000424011 PLEKHM2Q8IWE5 1019 aa20.46■□□□□ 0.87
CMTM3-202ENST00000424011 NUTM2BA6NNL0 878 aaPredicted RBP20.45■□□□□ 0.87
CMTM3-202ENST00000424011 NUTM2EB1AL46 878 aaPredicted RBP20.45■□□□□ 0.87
CMTM3-202ENST00000424011 NUTM2AQ8IVF1 878 aaPredicted RBP20.45■□□□□ 0.87
CMTM3-202ENST00000424011 FMNL2Q96PY5 1086 aa20.45■□□□□ 0.87
CMTM3-202ENST00000424011 LRRFIP2Q9Y608 721 aaKnown RBP20.45■□□□□ 0.87
CMTM3-202ENST00000424011 ADCY9O60503 1353 aa20.45■□□□□ 0.86
CMTM3-202ENST00000424011 ALDH1L1O75891 902 aa20.45■□□□□ 0.86
CMTM3-202ENST00000424011 SNRPA1P09661 255 aaKnown RBP20.45■□□□□ 0.86
CMTM3-202ENST00000424011 ERVV-2B6SEH9 535 aa20.44■□□□□ 0.86
CMTM3-202ENST00000424011 ANXA1P04083 346 aa20.44■□□□□ 0.86
CMTM3-202ENST00000424011 PRAMEF22A3QJZ6 481 aa20.43■□□□□ 0.86
CMTM3-202ENST00000424011 NKX1-1Q15270 411 aaPredicted RBP20.43■□□□□ 0.86
CMTM3-202ENST00000424011 ZNF496Q96IT1 587 aaPredicted RBP20.43■□□□□ 0.86
CMTM3-202ENST00000424011 TBC1D2Q9BYX2 928 aa20.43■□□□□ 0.86
CMTM3-202ENST00000424011 JCADQ9P266 1359 aa20.43■□□□□ 0.86
CMTM3-202ENST00000424011 MAP3K2Q9Y2U5 619 aa20.43■□□□□ 0.86
CMTM3-202ENST00000424011 PROSER3Q2NL68 480 aa20.42■□□□□ 0.86
CMTM3-202ENST00000424011 ZMYND15Q9H091 742 aa20.42■□□□□ 0.86
CMTM3-202ENST00000424011 TTC22Q5TAA0 569 aa20.41■□□□□ 0.86
CMTM3-202ENST00000424011 LRRCC1Q9C099 1032 aa20.41■□□□□ 0.86
CMTM3-202ENST00000424011 PNMA6EA0A0J9YXQ4 647 aa20.41■□□□□ 0.86
CMTM3-202ENST00000424011 PDIA6Q15084 440 aa20.41■□□□□ 0.86
CMTM3-202ENST00000424011 C16orf71Q8IYS4 520 aaPredicted RBP20.41■□□□□ 0.86
CMTM3-202ENST00000424011 APBB1O00213 710 aa20.4■□□□□ 0.86
CMTM3-202ENST00000424011 SSH3Q8TE77 659 aa20.4■□□□□ 0.86
CMTM3-202ENST00000424011 CDC45O75419 566 aa20.39■□□□□ 0.86
CMTM3-202ENST00000424011 LINS1Q8NG48 757 aa20.39■□□□□ 0.86
CMTM3-202ENST00000424011 IBTKQ9P2D0 1353 aaPredicted RBP20.39■□□□□ 0.85
CMTM3-202ENST00000424011 GSPT1P15170 499 aaKnown RBP20.39■□□□□ 0.85
CMTM3-202ENST00000424011 SMARCA5O60264 1052 aaPredicted RBP20.38■□□□□ 0.85
CMTM3-202ENST00000424011 OSBPL3Q9H4L5 887 aa20.38■□□□□ 0.85
CMTM3-202ENST00000424011 C9orf78Q9NZ63 289 aaPredicted RBP20.38■□□□□ 0.85
CMTM3-202ENST00000424011 EXOC6BQ9Y2D4 811 aa20.38■□□□□ 0.85
CMTM3-202ENST00000424011 RAB11FIP3O75154 756 aa20.38■□□□□ 0.85
CMTM3-202ENST00000424011 NBPF7P0C2Y1 421 aaPredicted RBP20.38■□□□□ 0.85
CMTM3-202ENST00000424011 TBC1D9Q6ZT07 1266 aa20.38■□□□□ 0.85
CMTM3-202ENST00000424011 SLKQ9H2G2 1235 aaPredicted RBP20.38■□□□□ 0.85
CMTM3-202ENST00000424011 RBM25P49756 843 aaKnown RBP20.37■□□□□ 0.85
CMTM3-202ENST00000424011 POLA2Q14181 598 aa20.37■□□□□ 0.85
CMTM3-202ENST00000424011 VSIG10Q8N0Z9 540 aa20.37■□□□□ 0.85
CMTM3-202ENST00000424011 PLCH1Q4KWH8 1693 aa20.37■□□□□ 0.85
CMTM3-202ENST00000424011 DISP2A7MBM2 1401 aa20.37■□□□□ 0.85
CMTM3-202ENST00000424011 NEXNQ0ZGT2 675 aa20.37■□□□□ 0.85
CMTM3-202ENST00000424011 PPP1R42Q7Z4L9 355 aa20.37■□□□□ 0.85
CMTM3-202ENST00000424011 RIC3Q7Z5B4 369 aa20.37■□□□□ 0.85
CMTM3-202ENST00000424011 DDX54Q8TDD1 881 aaKnown RBP20.37■□□□□ 0.85
CMTM3-202ENST00000424011 OTUD7AQ8TE49 926 aaPredicted RBP20.37■□□□□ 0.85
CMTM3-202ENST00000424011 SLIT2O94813 1529 aa20.37■□□□□ 0.85
CMTM3-202ENST00000424011 ERBB4Q15303 1308 aa20.36■□□□□ 0.85
CMTM3-202ENST00000424011 AIMP1Q12904 312 aaKnown RBP20.36■□□□□ 0.85
CMTM3-202ENST00000424011 HSP90AB4PQ58FF6 505 aa20.36■□□□□ 0.85
CMTM3-202ENST00000424011 CASC1Q6TDU7 716 aa20.36■□□□□ 0.85
CMTM3-202ENST00000424011 C5P01031 1676 aa20.35■□□□□ 0.85
CMTM3-202ENST00000424011 SPATA31A6Q5VVP1 1343 aa20.35■□□□□ 0.85
CMTM3-202ENST00000424011 SRGAP3O43295 1099 aa20.35■□□□□ 0.85
CMTM3-202ENST00000424011 MYL6BP14649 208 aa20.35■□□□□ 0.85
CMTM3-202ENST00000424011 USP16Q9Y5T5 823 aa20.35■□□□□ 0.85
CMTM3-202ENST00000424011 SPATA31A1Q5TZJ5 1347 aa20.35■□□□□ 0.85
CMTM3-202ENST00000424011 MTX1Q13505 466 aa20.35■□□□□ 0.85
CMTM3-202ENST00000424011 ANTXR1Q9H6X2 564 aa20.35■□□□□ 0.85
CMTM3-202ENST00000424011 FRAT2O75474 233 aaPredicted RBP20.34■□□□□ 0.85
CMTM3-202ENST00000424011 XAGE3Q8WTP9 111 aa20.34■□□□□ 0.85
CMTM3-202ENST00000424011 THRAP3Q9Y2W1 955 aaKnown RBP20.34■□□□□ 0.85
CMTM3-202ENST00000424011 UTYO14607 1347 aa20.34■□□□□ 0.85
CMTM3-202ENST00000424011 NRAPQ86VF7 1730 aa20.34■□□□□ 0.85
CMTM3-202ENST00000424011 PDE1AP54750 535 aa20.33■□□□□ 0.85
CMTM3-202ENST00000424011 COPS6Q7L5N1 327 aa20.33■□□□□ 0.85
CMTM3-202ENST00000424011 GRM8O00222 908 aa20.33■□□□□ 0.84
CMTM3-202ENST00000424011 HSPA1LP34931 641 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms