RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 GSE1Q14687 1217 aa8.71□□□□□ -1.02
SCN9A-202ENST00000409435 TWISTNBQ3B726 338 aaPredicted RBP8.71□□□□□ -1.02
SCN9A-202ENST00000409435 NSD3Q9BZ95 1437 aa8.71□□□□□ -1.02
SCN9A-202ENST00000409435 XBP1P17861 261 aa8.71□□□□□ -1.02
SCN9A-202ENST00000409435 C2orf69Q8N8R5 385 aa8.71□□□□□ -1.02
SCN9A-202ENST00000409435 CCDC47Q96A33 483 aaKnown RBP8.71□□□□□ -1.02
SCN9A-202ENST00000409435 NOD1Q9Y239 953 aa8.71□□□□□ -1.02
SCN9A-202ENST00000409435 EMILIN1Q9Y6C2 1016 aa8.71□□□□□ -1.02
SCN9A-202ENST00000409435 NPATQ14207 1427 aa8.71□□□□□ -1.02
SCN9A-202ENST00000409435 FKBP4Q02790 459 aaKnown RBP eCLIP8.71□□□□□ -1.02
SCN9A-202ENST00000409435 SLKQ9H2G2 1235 aaPredicted RBP8.71□□□□□ -1.02
SCN9A-202ENST00000409435 BRD4O60885 1362 aaPredicted RBP8.7□□□□□ -1.02
SCN9A-202ENST00000409435 IQCA1LA6NCM1 817 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 EP400NLQ6ZTU2 488 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 IP6K1Q92551 441 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 MKNK2Q9HBH9 465 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 MAPKBP1O60336 1514 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 PLS1Q14651 629 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 AKAP4Q5JQC9 854 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 RNF20Q5VTR2 975 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 ANKRD2Q9GZV1 360 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 PDZRN3Q9UPQ7 1066 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 TPM2P07951 284 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 LPXNO60711 386 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 ARMC9Q7Z3E5 817 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 SPRYD3Q8NCJ5 442 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 TARBP1Q13395 1621 aaKnown RBP8.7□□□□□ -1.02
SCN9A-202ENST00000409435 KIF16BQ96L93 1317 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 TDO2P48775 406 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 DCTN1Q14203 1278 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 SLC4A8Q2Y0W8 1093 aa8.7□□□□□ -1.02
SCN9A-202ENST00000409435 ARGLU1Q9NWB6 273 aaPredicted RBP8.7□□□□□ -1.02
SCN9A-202ENST00000409435 SURF6O75683 361 aaKnown RBP8.69□□□□□ -1.02
SCN9A-202ENST00000409435 ERFEQ4G0M1 354 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 BRDTQ58F21 947 aaPredicted RBP8.69□□□□□ -1.02
SCN9A-202ENST00000409435 DYDC1Q8WWB3 177 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 DISP1Q96F81 1524 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 USP8P40818 1118 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 FAM184AQ8NB25 1140 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 SMCR8Q8TEV9 937 aaPredicted RBP8.69□□□□□ -1.02
SCN9A-202ENST00000409435 FSD1Q9BTV5 496 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 ZKSCAN1P17029 563 aaPredicted RBP8.69□□□□□ -1.02
SCN9A-202ENST00000409435 PPM1FP49593 454 aaPredicted RBP8.69□□□□□ -1.02
SCN9A-202ENST00000409435 PPP4R3AQ6IN85 833 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 SLC5A4Q9NY91 659 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 EFCAB6Q5THR3 1501 aa8.69□□□□□ -1.02
SCN9A-202ENST00000409435 IDH1O75874 414 aaKnown RBP8.68□□□□□ -1.02
SCN9A-202ENST00000409435 TRIM21P19474 475 aaKnown RBP8.68□□□□□ -1.02
SCN9A-202ENST00000409435 MPNDQ8N594 471 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 WDR70Q9NW82 654 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 A2ML1A8K2U0 1454 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 HMGB1P09429 215 aaKnown RBP8.68□□□□□ -1.02
SCN9A-202ENST00000409435 EHMT1Q9H9B1 1298 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 ZCCHC11Q5TAX3 1644 aaKnown RBP8.68□□□□□ -1.02
SCN9A-202ENST00000409435 PPP1R12BO60237 982 aaPredicted RBP8.68□□□□□ -1.02
SCN9A-202ENST00000409435 PDE3AQ14432 1141 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 CCDC96Q2M329 555 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 MCM10Q7L590 875 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 PLCD4Q9BRC7 762 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 DBF4Q9UBU7 674 aaPredicted RBP8.68□□□□□ -1.02
SCN9A-202ENST00000409435 GGA1Q9UJY5 639 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 KDM5DQ9BY66 1539 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 DDX11L8A8MPP1 907 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 UFL1O94874 794 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 ZNF444Q8N0Y2 327 aaPredicted RBP8.68□□□□□ -1.02
SCN9A-202ENST00000409435 DRC1Q96MC2 740 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 DEF6Q9H4E7 631 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 FAM43AQ8N2R8 423 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 NFATC2IPQ8NCF5 419 aa8.68□□□□□ -1.02
SCN9A-202ENST00000409435 SAFBQ15424 915 aaKnown RBP eCLIP8.67□□□□□ -1.023e-6■■□□□ 14.5
SCN9A-202ENST00000409435 PARP10Q53GL7 1025 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 CUL5Q93034 780 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 MIS18AQ9NYP9 233 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 YTHDC2Q9H6S0 1430 aaKnown RBP8.67□□□□□ -1.02
SCN9A-202ENST00000409435 CCT4P50991 539 aaKnown RBP8.67□□□□□ -1.02
SCN9A-202ENST00000409435 TNFAIP1Q13829 316 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 SF3A1Q15459 793 aaKnown RBP8.67□□□□□ -1.02
SCN9A-202ENST00000409435 SPC25Q9HBM1 224 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 GLRX3O76003 335 aaKnown RBP8.67□□□□□ -1.02
SCN9A-202ENST00000409435 CREBRFQ8IUR6 639 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 PLCD3Q8N3E9 789 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 GPHNQ9NQX3 736 aaPredicted RBP8.67□□□□□ -1.02
SCN9A-202ENST00000409435 H3BQV1 296 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 SLC39A6Q13433 755 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 IFFO2Q5TF58 517 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 ANKRD45Q5TZF3 282 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 LDHAL6AQ6ZMR3 332 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 CCAR2Q8N163 923 aaKnown RBP8.67□□□□□ -1.02
SCN9A-202ENST00000409435 TSHZ2Q9NRE2 1034 aa8.67□□□□□ -1.02
SCN9A-202ENST00000409435 SAMD9Q5K651 1589 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 CCDC93Q567U6 631 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 DNAI2Q9GZS0 605 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 TSPYL1Q9H0U9 437 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 HSP90B2PQ58FF3 399 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 SLC27A3Q5K4L6 730 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 TTLL6Q8N841 843 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 MAP3K12Q12852 859 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 PABPC4Q13310 644 aaKnown RBP eCLIP8.66□□□□□ -1.02
SCN9A-202ENST00000409435 GNAI2P04899 355 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 PIK3R4Q99570 1358 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 416.8 ms