RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 ATP8B2P98198 1209 aa14.88□□□□□ -0.03
USP3-202ENST00000380324 AIMP1Q12904 312 aaKnown RBP14.88□□□□□ -0.03
USP3-202ENST00000380324 ZNF496Q96IT1 587 aaPredicted RBP14.88□□□□□ -0.03
USP3-202ENST00000380324 CDC45O75419 566 aa14.87□□□□□ -0.03
USP3-202ENST00000380324 TTC5Q8N0Z6 440 aa14.87□□□□□ -0.03
USP3-202ENST00000380324 MYL6BP14649 208 aa14.87□□□□□ -0.03
USP3-202ENST00000380324 RTL5Q5HYW3 569 aaPredicted RBP14.87□□□□□ -0.03
USP3-202ENST00000380324 PLEKHG2Q9H7P9 1386 aa14.86□□□□□ -0.03
USP3-202ENST00000380324 CABP4P57796 275 aa14.86□□□□□ -0.03
USP3-202ENST00000380324 TSHZ3Q63HK5 1081 aa14.86□□□□□ -0.03
USP3-202ENST00000380324 LRRCC1Q9C099 1032 aa14.86□□□□□ -0.03
USP3-202ENST00000380324 HYPKQ9NX55 129 aa14.86□□□□□ -0.03
USP3-202ENST00000380324 IBTKQ9P2D0 1353 aaPredicted RBP14.86□□□□□ -0.03
USP3-202ENST00000380324 HSP90AB1P08238 724 aaKnown RBP14.86□□□□□ -0.03
USP3-202ENST00000380324 CWF19L2Q2TBE0 894 aaKnown RBP14.86□□□□□ -0.03
USP3-202ENST00000380324 TBC1D2Q9BYX2 928 aa14.86□□□□□ -0.03
USP3-202ENST00000380324 USP35Q9P2H5 1018 aa14.86□□□□□ -0.03
USP3-202ENST00000380324 PCDH11XQ9BZA7 1347 aa14.85□□□□□ -0.03
USP3-202ENST00000380324 PCDH11YQ9BZA8 1340 aa14.85□□□□□ -0.03
USP3-202ENST00000380324 SHANK3Q9BYB0 1731 aa14.85□□□□□ -0.03
USP3-202ENST00000380324 PIP4K2AP48426 406 aaPredicted RBP14.85□□□□□ -0.03
USP3-202ENST00000380324 LARP1Q6PKG0 1096 aaKnown RBP14.85□□□□□ -0.03
USP3-202ENST00000380324 KSR2Q6VAB6 950 aa14.85□□□□□ -0.03
USP3-202ENST00000380324 PPP1R42Q7Z4L9 355 aa14.85□□□□□ -0.03
USP3-202ENST00000380324 DDX21Q9NR30 783 aaKnown RBP eCLIP14.85□□□□□ -0.03
USP3-202ENST00000380324 SRGAP3O43295 1099 aa14.84□□□□□ -0.03
USP3-202ENST00000380324 MYT1Q01538 1121 aa14.84□□□□□ -0.03
USP3-202ENST00000380324 SLKQ9H2G2 1235 aaPredicted RBP14.84□□□□□ -0.03
USP3-202ENST00000380324 SDSP20132 328 aa14.84□□□□□ -0.03
USP3-202ENST00000380324 EVA1CP58658 441 aa14.84□□□□□ -0.03
USP3-202ENST00000380324 PDIA6Q15084 440 aa14.84□□□□□ -0.03
USP3-202ENST00000380324 ZCRB1Q8TBF4 217 aaKnown RBP14.84□□□□□ -0.03
USP3-202ENST00000380324 ROBO1Q9Y6N7 1651 aa14.84□□□□□ -0.03
USP3-202ENST00000380324 C9orf78Q9NZ63 289 aaPredicted RBP14.83□□□□□ -0.03
USP3-202ENST00000380324 LAMB4A4D0S4 1761 aa14.83□□□□□ -0.04
USP3-202ENST00000380324 DDX58O95786 925 aaKnown RBP14.83□□□□□ -0.04
USP3-202ENST00000380324 IL2RBP14784 551 aa14.83□□□□□ -0.04
USP3-202ENST00000380324 PDE1AP54750 535 aa14.83□□□□□ -0.04
USP3-202ENST00000380324 SSH3Q8TE77 659 aa14.83□□□□□ -0.04
USP3-202ENST00000380324 GLI3P10071 1580 aa14.83□□□□□ -0.04
USP3-202ENST00000380324 TUBGCP6Q96RT7 1819 aa14.83□□□□□ -0.04
USP3-202ENST00000380324 RBM25P49756 843 aaKnown RBP14.82□□□□□ -0.04
USP3-202ENST00000380324 DDX54Q8TDD1 881 aaKnown RBP14.82□□□□□ -0.04
USP3-202ENST00000380324 FMNL2Q96PY5 1086 aa14.82□□□□□ -0.04
USP3-202ENST00000380324 IL1RAPL2Q9NP60 686 aa14.82□□□□□ -0.04
USP3-202ENST00000380324 USP16Q9Y5T5 823 aa14.82□□□□□ -0.04
USP3-202ENST00000380324 SURF6O75683 361 aaKnown RBP14.82□□□□□ -0.04
USP3-202ENST00000380324 SNRPA1P09661 255 aaKnown RBP14.82□□□□□ -0.04
USP3-202ENST00000380324 RIC3Q7Z5B4 369 aa14.82□□□□□ -0.04
USP3-202ENST00000380324 CARD10Q9BWT7 1032 aa14.82□□□□□ -0.04
USP3-202ENST00000380324 MX1P20591 662 aa14.81□□□□□ -0.04
USP3-202ENST00000380324 SPRYD3Q8NCJ5 442 aa14.81□□□□□ -0.04
USP3-202ENST00000380324 XAGE3Q8WTP9 111 aa14.81□□□□□ -0.04
USP3-202ENST00000380324 ALDH1L1O75891 902 aa14.81□□□□□ -0.04
USP3-202ENST00000380324 POLA2Q14181 598 aa14.8□□□□□ -0.04
USP3-202ENST00000380324 AFDNP55196 1824 aaKnown RBP14.8□□□□□ -0.04
USP3-202ENST00000380324 SALL3Q9BXA9 1300 aa14.8□□□□□ -0.04
USP3-202ENST00000380324 COPS6Q7L5N1 327 aa14.8□□□□□ -0.04
USP3-202ENST00000380324 LINS1Q8NG48 757 aa14.8□□□□□ -0.04
USP3-202ENST00000380324 BTG4Q9NY30 223 aa14.8□□□□□ -0.04
USP3-202ENST00000380324 UBR2Q8IWV8 1755 aa14.8□□□□□ -0.04
USP3-202ENST00000380324 KAT6BQ8WYB5 2073 aa14.79□□□□□ -0.04
USP3-202ENST00000380324 ARFGEF2Q9Y6D5 1785 aa14.79□□□□□ -0.04
USP3-202ENST00000380324 TOGARAM1Q9Y4F4 1720 aa14.79□□□□□ -0.04
USP3-202ENST00000380324 CASC1Q6TDU7 716 aa14.79□□□□□ -0.04
USP3-202ENST00000380324 OSBPL3Q9H4L5 887 aa14.79□□□□□ -0.04
USP3-202ENST00000380324 GRM8O00222 908 aa14.78□□□□□ -0.04
USP3-202ENST00000380324 AK9Q5TCS8 1911 aa14.78□□□□□ -0.04
USP3-202ENST00000380324 NFKBIBQ15653 356 aa14.78□□□□□ -0.04
USP3-202ENST00000380324 NUTM1Q86Y26 1132 aa14.78□□□□□ -0.04
USP3-202ENST00000380324 HSCBQ8IWL3 235 aa14.78□□□□□ -0.04
USP3-202ENST00000380324 PAPPAQ13219 1627 aa14.78□□□□□ -0.04
USP3-202ENST00000380324 IGKV5-2P06315 115 aa14.77□□□□□ -0.04
USP3-202ENST00000380324 NEXNQ0ZGT2 675 aa14.77□□□□□ -0.04
USP3-202ENST00000380324 OS9Q13438 667 aaPredicted RBP14.77□□□□□ -0.04
USP3-202ENST00000380324 MYD88Q99836 296 aa14.77□□□□□ -0.04
USP3-202ENST00000380324 RHPN1Q8TCX5 695 aa14.77□□□□□ -0.05
USP3-202ENST00000380324 KIF2CQ99661 725 aa14.77□□□□□ -0.05
USP3-202ENST00000380324 TRIM6-TRIM34B2RNG4 842 aa14.76□□□□□ -0.05
USP3-202ENST00000380324 PTCD1O75127 700 aaKnown RBP14.76□□□□□ -0.05
USP3-202ENST00000380324 LRP10Q7Z4F1 713 aa14.76□□□□□ -0.05
USP3-202ENST00000380324 SUCLG2Q96I99 432 aa14.76□□□□□ -0.05
USP3-202ENST00000380324 KCPQ6ZWJ8 1503 aa14.76□□□□□ -0.05
USP3-202ENST00000380324 RAB11FIP3O75154 756 aa14.76□□□□□ -0.05
USP3-202ENST00000380324 RILPL2Q969X0 211 aa14.76□□□□□ -0.05
USP3-202ENST00000380324 KIF1BPQ96EK5 621 aa14.76□□□□□ -0.05
USP3-202ENST00000380324 BICC1Q9H694 974 aaKnown RBP14.76□□□□□ -0.05
USP3-202ENST00000380324 PA2G4Q9UQ80 394 aaKnown RBP14.76□□□□□ -0.05
USP3-202ENST00000380324 COL14A1Q05707 1796 aaKnown RBP14.76□□□□□ -0.05
USP3-202ENST00000380324 NEURL1BA8MQ27 555 aa14.75□□□□□ -0.05
USP3-202ENST00000380324 ERVV-2B6SEH9 535 aa14.75□□□□□ -0.05
USP3-202ENST00000380324 ANKRD13DQ6ZTN6 518 aa14.75□□□□□ -0.05
USP3-202ENST00000380324 COL16A1Q07092 1604 aaPredicted RBP14.75□□□□□ -0.05
USP3-202ENST00000380324 MTX1Q13505 466 aa14.75□□□□□ -0.05
USP3-202ENST00000380324 RBM42Q9BTD8 480 aaKnown RBP14.75□□□□□ -0.05
USP3-202ENST00000380324 AHDC1Q5TGY3 1603 aaPredicted RBP14.74□□□□□ -0.05
USP3-202ENST00000380324 KAZALD1Q96I82 304 aa14.74□□□□□ -0.05
USP3-202ENST00000380324 METTL22Q9BUU2 404 aaPredicted RBP14.74□□□□□ -0.05
USP3-202ENST00000380324 ANTXR1Q9H6X2 564 aa14.74□□□□□ -0.05
USP3-202ENST00000380324 NKX1-1Q15270 411 aaPredicted RBP14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 165.4 ms