RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 RBM42Q9BTD8 480 aaKnown RBP13.34□□□□□ -0.27
NEDD9-201ENST00000379433 CHD2O14647 1828 aaKnown RBP13.34□□□□□ -0.27
NEDD9-201ENST00000379433 BRPF1P55201 1214 aaPredicted RBP13.33□□□□□ -0.28
NEDD9-201ENST00000379433 BRINP3Q76B58 766 aa13.33□□□□□ -0.28
NEDD9-201ENST00000379433 ANKRD44Q8N8A2 993 aa13.33□□□□□ -0.28
NEDD9-201ENST00000379433 SLAIN2Q9P270 581 aa13.33□□□□□ -0.28
NEDD9-201ENST00000379433 CCT4P50991 539 aaKnown RBP13.33□□□□□ -0.28
NEDD9-201ENST00000379433 BECN1Q14457 450 aa13.33□□□□□ -0.28
NEDD9-201ENST00000379433 FRAT2O75474 233 aaPredicted RBP13.33□□□□□ -0.28
NEDD9-201ENST00000379433 TBC1D9Q6ZT07 1266 aa13.33□□□□□ -0.28
NEDD9-201ENST00000379433 C9orf78Q9NZ63 289 aaPredicted RBP13.33□□□□□ -0.28
NEDD9-201ENST00000379433 FMN2Q9NZ56 1722 aa13.32□□□□□ -0.28
NEDD9-201ENST00000379433 RTL1A6NKG5 1358 aa13.32□□□□□ -0.28
NEDD9-201ENST00000379433 ADAMTSL3P82987 1691 aa13.32□□□□□ -0.28
NEDD9-201ENST00000379433 SURF6O75683 361 aaKnown RBP13.32□□□□□ -0.28
NEDD9-201ENST00000379433 NUTM1Q86Y26 1132 aa13.32□□□□□ -0.28
NEDD9-201ENST00000379433 TBC1D32Q96NH3 1257 aa13.32□□□□□ -0.28
NEDD9-201ENST00000379433 SRCIN1Q9C0H9 1055 aa13.32□□□□□ -0.28
NEDD9-201ENST00000379433 SRGAP3O43295 1099 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 HMMRO75330 724 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 AMOTQ4VCS5 1084 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 PLEKHM2Q8IWE5 1019 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 DCTPP1Q9H773 170 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 MAP3K2Q9Y2U5 619 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 GSPT1P15170 499 aaKnown RBP13.31□□□□□ -0.28
NEDD9-201ENST00000379433 TTC5Q8N0Z6 440 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 SYTL4Q96C24 671 aaPredicted RBP13.31□□□□□ -0.28
NEDD9-201ENST00000379433 TBC1D2Q9BYX2 928 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 NFKBIBQ15653 356 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 NOL8Q76FK4 1167 aaKnown RBP13.31□□□□□ -0.28
NEDD9-201ENST00000379433 USP44Q9H0E7 712 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 SIL1Q9H173 461 aa13.31□□□□□ -0.28
NEDD9-201ENST00000379433 HTATSF1O43719 755 aaKnown RBP13.3□□□□□ -0.28
NEDD9-201ENST00000379433 RPAP2Q8IXW5 612 aaPredicted RBP13.3□□□□□ -0.28
NEDD9-201ENST00000379433 PXDNQ92626 1479 aa13.3□□□□□ -0.28
NEDD9-201ENST00000379433 PPP1R42Q7Z4L9 355 aa13.29□□□□□ -0.28
NEDD9-201ENST00000379433 RIC3Q7Z5B4 369 aa13.29□□□□□ -0.28
NEDD9-201ENST00000379433 DNAAF4Q8WXU2 420 aa13.29□□□□□ -0.28
NEDD9-201ENST00000379433 RGS12O14924 1447 aa13.29□□□□□ -0.28
NEDD9-201ENST00000379433 CABP4P57796 275 aa13.29□□□□□ -0.28
NEDD9-201ENST00000379433 ZNF496Q96IT1 587 aaPredicted RBP13.29□□□□□ -0.28
NEDD9-201ENST00000379433 PA2G4Q9UQ80 394 aaKnown RBP13.29□□□□□ -0.28
NEDD9-201ENST00000379433 USP16Q9Y5T5 823 aa13.29□□□□□ -0.28
NEDD9-201ENST00000379433 ATP5J2-PTCD1G3V325 749 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 PTMAP06454 111 aaKnown RBP13.28□□□□□ -0.28
NEDD9-201ENST00000379433 GNAI3P08754 354 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 RGPD2P0DJD1 1756 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 CYP27B1O15528 508 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 GIGYF1O75420 1035 aaPredicted RBP13.28□□□□□ -0.28
NEDD9-201ENST00000379433 ADAMTS2O95450 1211 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 PIP4K2BP78356 416 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 KLHDC4Q8TBB5 520 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 SPG7Q9UQ90 795 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 CHMP3Q9Y3E7 222 aa13.28□□□□□ -0.28
NEDD9-201ENST00000379433 LTN1O94822 1766 aa13.27□□□□□ -0.28
NEDD9-201ENST00000379433 SDSP20132 328 aa13.27□□□□□ -0.28
NEDD9-201ENST00000379433 ZNF790Q6PG37 636 aa13.27□□□□□ -0.28
NEDD9-201ENST00000379433 BMP2KLQ5H9B9 411 aa13.27□□□□□ -0.29
NEDD9-201ENST00000379433 LARP1Q6PKG0 1096 aaKnown RBP13.27□□□□□ -0.29
NEDD9-201ENST00000379433 DBF4Q9UBU7 674 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-201ENST00000379433 NUTM2BA6NNL0 878 aaPredicted RBP13.26□□□□□ -0.29
NEDD9-201ENST00000379433 NUTM2EB1AL46 878 aaPredicted RBP13.26□□□□□ -0.29
NEDD9-201ENST00000379433 NUTM2AQ8IVF1 878 aaPredicted RBP13.26□□□□□ -0.29
NEDD9-201ENST00000379433 HSP90AB1P08238 724 aaKnown RBP13.26□□□□□ -0.29
NEDD9-201ENST00000379433 COPS6Q7L5N1 327 aa13.26□□□□□ -0.29
NEDD9-201ENST00000379433 HSCBQ8IWL3 235 aa13.26□□□□□ -0.29
NEDD9-201ENST00000379433 LRRCC1Q9C099 1032 aa13.26□□□□□ -0.29
NEDD9-201ENST00000379433 MST1RQ04912 1400 aa13.26□□□□□ -0.29
NEDD9-201ENST00000379433 PHKG2P15735 406 aa13.26□□□□□ -0.29
NEDD9-201ENST00000379433 IFNL2Q8IZJ0 200 aa13.26□□□□□ -0.29
NEDD9-201ENST00000379433 XAGE3Q8WTP9 111 aa13.25□□□□□ -0.29
NEDD9-201ENST00000379433 SPATA31A3Q5VYP0 1347 aa13.25□□□□□ -0.29
NEDD9-201ENST00000379433 NWD1Q149M9 1564 aa13.25□□□□□ -0.29
NEDD9-201ENST00000379433 CDC45O75419 566 aa13.25□□□□□ -0.29
NEDD9-201ENST00000379433 GOLGB1Q14789 3259 aaKnown RBP13.25□□□□□ -0.29
NEDD9-201ENST00000379433 TTC22Q5TAA0 569 aa13.24□□□□□ -0.29
NEDD9-201ENST00000379433 CCDC85AQ96PX6 553 aaPredicted RBP13.24□□□□□ -0.29
NEDD9-201ENST00000379433 MYD88Q99836 296 aa13.24□□□□□ -0.29
NEDD9-201ENST00000379433 GZF1Q9H116 711 aaPredicted RBP13.24□□□□□ -0.29
NEDD9-201ENST00000379433 SLC52A2Q9HAB3 445 aa13.24□□□□□ -0.29
NEDD9-201ENST00000379433 ATP10DQ9P241 1426 aa13.24□□□□□ -0.29
NEDD9-201ENST00000379433 KIF24Q5T7B8 1368 aa13.23□□□□□ -0.29
NEDD9-201ENST00000379433 NFAT5O94916 1531 aa13.23□□□□□ -0.29
NEDD9-201ENST00000379433 CD2BP2O95400 341 aaKnown RBP13.23□□□□□ -0.29
NEDD9-201ENST00000379433 DTNBO60941 627 aa13.23□□□□□ -0.29
NEDD9-201ENST00000379433 PDE1AP54750 535 aa13.23□□□□□ -0.29
NEDD9-201ENST00000379433 BTG4Q9NY30 223 aa13.23□□□□□ -0.29
NEDD9-201ENST00000379433 RGPD1P0DJD0 1748 aa13.22□□□□□ -0.29
NEDD9-201ENST00000379433 CEMIPQ8WUJ3 1361 aa13.22□□□□□ -0.29
NEDD9-201ENST00000379433 ATP8B2P98198 1209 aa13.22□□□□□ -0.29
NEDD9-201ENST00000379433 FOXD4L5Q5VV16 416 aaPredicted RBP13.22□□□□□ -0.29
NEDD9-201ENST00000379433 UNC5CLQ8IV45 518 aa13.22□□□□□ -0.29
NEDD9-201ENST00000379433 FOXD4L4Q8WXT5 416 aaPredicted RBP13.22□□□□□ -0.29
NEDD9-201ENST00000379433 BEND3Q5T5X7 828 aa13.22□□□□□ -0.29
NEDD9-201ENST00000379433 ZBTB3Q9H5J0 574 aa13.22□□□□□ -0.29
NEDD9-201ENST00000379433 ANO2Q9NQ90 1003 aa13.22□□□□□ -0.29
NEDD9-201ENST00000379433 SOS1Q07889 1333 aaPredicted RBP13.22□□□□□ -0.29
NEDD9-201ENST00000379433 MX1P20591 662 aa13.21□□□□□ -0.29
NEDD9-201ENST00000379433 A1BGP04217 495 aa13.21□□□□□ -0.29
NEDD9-201ENST00000379433 CASC1Q6TDU7 716 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms