RNA–Protein interactions for RNA: ENST00000376724.6

TRIM40-206, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TRIM40, Length 2,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-206ENST00000376724 USP16Q9Y5T5 823 aa16.14■□□□□ 0.17
TRIM40-206ENST00000376724 PXDNLA1KZ92 1463 aa16.14■□□□□ 0.17
TRIM40-206ENST00000376724 COL16A1Q07092 1604 aaPredicted RBP16.14■□□□□ 0.17
TRIM40-206ENST00000376724 ERVV-2B6SEH9 535 aa16.14■□□□□ 0.17
TRIM40-206ENST00000376724 PDIA6Q15084 440 aa16.14■□□□□ 0.17
TRIM40-206ENST00000376724 NKX1-1Q15270 411 aaPredicted RBP16.14■□□□□ 0.17
TRIM40-206ENST00000376724 MAP3K2Q9Y2U5 619 aa16.14■□□□□ 0.17
TRIM40-206ENST00000376724 ADCY9O60503 1353 aa16.14■□□□□ 0.17
TRIM40-206ENST00000376724 C5P01031 1676 aa16.13■□□□□ 0.17
TRIM40-206ENST00000376724 MSH5O43196 834 aa16.13■□□□□ 0.17
TRIM40-206ENST00000376724 UBTFL1P0CB47 393 aaPredicted RBP16.13■□□□□ 0.17
TRIM40-206ENST00000376724 PIP4K2AP48426 406 aaPredicted RBP16.13■□□□□ 0.17
TRIM40-206ENST00000376724 BEND3Q5T5X7 828 aa16.13■□□□□ 0.17
TRIM40-206ENST00000376724 LRRFIP2Q9Y608 721 aaKnown RBP16.13■□□□□ 0.17
TRIM40-206ENST00000376724 HMMRO75330 724 aa16.12■□□□□ 0.17
TRIM40-206ENST00000376724 ZBTB47Q9UFB7 747 aaPredicted RBP16.12■□□□□ 0.17
TRIM40-206ENST00000376724 KSR2Q6VAB6 950 aa16.12■□□□□ 0.17
TRIM40-206ENST00000376724 SHANK3Q9BYB0 1731 aa16.12■□□□□ 0.17
TRIM40-206ENST00000376724 PTCD1O75127 700 aaKnown RBP16.11■□□□□ 0.17
TRIM40-206ENST00000376724 SEC24BO95487 1268 aa16.11■□□□□ 0.17
TRIM40-206ENST00000376724 PNMA6EA0A0J9YXQ4 647 aa16.1■□□□□ 0.17
TRIM40-206ENST00000376724 DDX58O95786 925 aaKnown RBP16.1■□□□□ 0.17
TRIM40-206ENST00000376724 NBPF7P0C2Y1 421 aaPredicted RBP16.1■□□□□ 0.17
TRIM40-206ENST00000376724 SMARCA5O60264 1052 aaPredicted RBP16.09■□□□□ 0.17
TRIM40-206ENST00000376724 RIC3Q7Z5B4 369 aa16.09■□□□□ 0.17
TRIM40-206ENST00000376724 XAGE3Q8WTP9 111 aa16.09■□□□□ 0.17
TRIM40-206ENST00000376724 IPO9Q96P70 1041 aaKnown RBP16.09■□□□□ 0.17
TRIM40-206ENST00000376724 TMOD3Q9NYL9 352 aa16.09■□□□□ 0.17
TRIM40-206ENST00000376724 N4BP2Q86UW6 1770 aaPredicted RBP16.09■□□□□ 0.17
TRIM40-206ENST00000376724 ATP8B2P98198 1209 aa16.09■□□□□ 0.17
TRIM40-206ENST00000376724 CWF19L2Q2TBE0 894 aaKnown RBP16.09■□□□□ 0.17
TRIM40-206ENST00000376724 COPS6Q7L5N1 327 aa16.09■□□□□ 0.17
TRIM40-206ENST00000376724 EXOC5O00471 708 aa16.08■□□□□ 0.16
TRIM40-206ENST00000376724 C16orf71Q8IYS4 520 aaPredicted RBP16.08■□□□□ 0.16
TRIM40-206ENST00000376724 C9orf78Q9NZ63 289 aaPredicted RBP16.07■□□□□ 0.16
TRIM40-206ENST00000376724 EXOC6BQ9Y2D4 811 aa16.07■□□□□ 0.16
TRIM40-206ENST00000376724 CCDC9Q9Y3X0 531 aaKnown RBP16.07■□□□□ 0.16
TRIM40-206ENST00000376724 PLCH1Q4KWH8 1693 aa16.07■□□□□ 0.16
TRIM40-206ENST00000376724 DISP2A7MBM2 1401 aa16.07■□□□□ 0.16
TRIM40-206ENST00000376724 TOGARAM1Q9Y4F4 1720 aa16.05■□□□□ 0.16
TRIM40-206ENST00000376724 ALDH1L1O75891 902 aa16.05■□□□□ 0.16
TRIM40-206ENST00000376724 OTUD7AQ8TE49 926 aaPredicted RBP16.05■□□□□ 0.16
TRIM40-206ENST00000376724 PIGBQ92521 554 aa16.05■□□□□ 0.16
TRIM40-206ENST00000376724 SPATA31A1Q5TZJ5 1347 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 ANKRD13DQ6ZTN6 518 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 LRP10Q7Z4F1 713 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 PPP1R42Q7Z4L9 355 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 PLEKHM2Q8IWE5 1019 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 LINS1Q8NG48 757 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 SYTL4Q96C24 671 aaPredicted RBP16.04■□□□□ 0.16
TRIM40-206ENST00000376724 ASAP1Q9ULH1 1129 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 NEXNQ0ZGT2 675 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 MYD88Q99836 296 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 GLI3P10071 1580 aa16.04■□□□□ 0.16
TRIM40-206ENST00000376724 KCPQ6ZWJ8 1503 aa16.03■□□□□ 0.16
TRIM40-206ENST00000376724 SRGAP3O43295 1099 aa16.03■□□□□ 0.16
TRIM40-206ENST00000376724 A1BGP04217 495 aa16.03■□□□□ 0.16
TRIM40-206ENST00000376724 BMP2KLQ5H9B9 411 aa16.03■□□□□ 0.16
TRIM40-206ENST00000376724 NBPF26B4DH59 902 aa16.02■□□□□ 0.16
TRIM40-206ENST00000376724 IGKV5-2P06315 115 aa16.02■□□□□ 0.16
TRIM40-206ENST00000376724 PRKCSHP14314 528 aaPredicted RBP16.02■□□□□ 0.16
TRIM40-206ENST00000376724 NBPF14Q5TI25 921 aa16.02■□□□□ 0.16
TRIM40-206ENST00000376724 NBPF10Q6P3W6 841 aaKnown RBP16.02■□□□□ 0.16
TRIM40-206ENST00000376724 AEBP2Q6ZN18 517 aaPredicted RBP16.02■□□□□ 0.16
TRIM40-206ENST00000376724 NBPF15Q8N660 670 aa16.02■□□□□ 0.16
TRIM40-206ENST00000376724 UPF2Q9HAU5 1272 aaKnown RBP16.02■□□□□ 0.16
TRIM40-206ENST00000376724 UBR2Q8IWV8 1755 aa16.02■□□□□ 0.15
TRIM40-206ENST00000376724 A0A0G2JS52 829 aa16.02■□□□□ 0.15
TRIM40-206ENST00000376724 ERICH6Q7L0X2 663 aa16.02■□□□□ 0.15
TRIM40-206ENST00000376724 SSH3Q8TE77 659 aa16.02■□□□□ 0.15
TRIM40-206ENST00000376724 RBM42Q9BTD8 480 aaKnown RBP16.02■□□□□ 0.15
TRIM40-206ENST00000376724 METTL22Q9BUU2 404 aaPredicted RBP16.02■□□□□ 0.15
TRIM40-206ENST00000376724 GRM8O00222 908 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 MFAP1P55081 439 aaKnown RBP16.01■□□□□ 0.15
TRIM40-206ENST00000376724 DDB1Q16531 1140 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 C8orf37Q96NL8 207 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 LRRCC1Q9C099 1032 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 ATG3Q9NT62 314 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 THRAP3Q9Y2W1 955 aaKnown RBP16.01■□□□□ 0.15
TRIM40-206ENST00000376724 NOP58Q9Y2X3 529 aaKnown RBP16.01■□□□□ 0.15
TRIM40-206ENST00000376724 PAPPAQ13219 1627 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 LAMB4A4D0S4 1761 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 NRAPQ86VF7 1730 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 KAT6BQ8WYB5 2073 aa16.01■□□□□ 0.15
TRIM40-206ENST00000376724 SURF6O75683 361 aaKnown RBP16.01■□□□□ 0.15
TRIM40-206ENST00000376724 TNS2Q63HR2 1409 aa16■□□□□ 0.15
TRIM40-206ENST00000376724 NEURL1BA8MQ27 555 aa16■□□□□ 0.15
TRIM40-206ENST00000376724 NGLY1Q96IV0 654 aa16■□□□□ 0.15
TRIM40-206ENST00000376724 CDCA7Q9BWT1 371 aaPredicted RBP16■□□□□ 0.15
TRIM40-206ENST00000376724 IBTKQ9P2D0 1353 aaPredicted RBP16■□□□□ 0.15
TRIM40-206ENST00000376724 SPATA31A5Q5VU36 1347 aa16■□□□□ 0.15
TRIM40-206ENST00000376724 SPATA31A7Q8IWB4 1347 aa16■□□□□ 0.15
TRIM40-206ENST00000376724 GSPT1P15170 499 aaKnown RBP15.99■□□□□ 0.15
TRIM40-206ENST00000376724 POLA2Q14181 598 aa15.99■□□□□ 0.15
TRIM40-206ENST00000376724 DDRGK1Q96HY6 314 aa15.99■□□□□ 0.15
TRIM40-206ENST00000376724 ZNF330Q9Y3S2 320 aaPredicted RBP15.99■□□□□ 0.15
TRIM40-206ENST00000376724 ERBB4Q15303 1308 aa15.99■□□□□ 0.15
TRIM40-206ENST00000376724 ATP5J2-PTCD1G3V325 749 aa15.99■□□□□ 0.15
TRIM40-206ENST00000376724 PRIM1P49642 420 aaKnown RBP15.99■□□□□ 0.15
TRIM40-206ENST00000376724 TTLL7Q6ZT98 887 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms