RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ATP2B2Q01814 1243 aa13.39□□□□□ -0.27
PTPRF-203ENST00000372407 TAF7Q15545 349 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-203ENST00000372407 ZHX3Q9H4I2 956 aa13.39□□□□□ -0.27
PTPRF-203ENST00000372407 SF3B2Q13435 895 aaKnown RBP13.39□□□□□ -0.27
PTPRF-203ENST00000372407 SKIDA1Q1XH10 827 aa13.39□□□□□ -0.27
PTPRF-203ENST00000372407 BMP2KLQ5H9B9 411 aa13.39□□□□□ -0.27
PTPRF-203ENST00000372407 KCNH5Q8NCM2 988 aa13.39□□□□□ -0.27
PTPRF-203ENST00000372407 ARHGAP29Q52LW3 1261 aa13.38□□□□□ -0.27
PTPRF-203ENST00000372407 TNPO1Q92973 898 aaKnown RBP13.38□□□□□ -0.27
PTPRF-203ENST00000372407 TANGO6Q9C0B7 1094 aa13.38□□□□□ -0.27
PTPRF-203ENST00000372407 SSFA2P28290 1259 aa13.38□□□□□ -0.27
PTPRF-203ENST00000372407 ZC3H6P61129 1189 aaKnown RBP13.38□□□□□ -0.27
PTPRF-203ENST00000372407 ANO10Q9NW15 660 aa13.38□□□□□ -0.27
PTPRF-203ENST00000372407 LIMCH1Q9UPQ0 1083 aa13.38□□□□□ -0.27
PTPRF-203ENST00000372407 BOLA2Q9H3K6 86 aa13.38□□□□□ -0.27
PTPRF-203ENST00000372407 LRP2BPQ9P2M1 347 aa13.38□□□□□ -0.27
PTPRF-203ENST00000372407 EPB41L2O43491 1005 aaKnown RBP13.38□□□□□ -0.27
PTPRF-203ENST00000372407 ADAMTS2O95450 1211 aa13.37□□□□□ -0.27
PTPRF-203ENST00000372407 PLEKHH1Q9ULM0 1364 aa13.37□□□□□ -0.27
PTPRF-203ENST00000372407 PTPN14Q15678 1187 aa13.37□□□□□ -0.27
PTPRF-203ENST00000372407 CAMK4Q16566 473 aa13.37□□□□□ -0.27
PTPRF-203ENST00000372407 AIDAQ96BJ3 306 aa13.37□□□□□ -0.27
PTPRF-203ENST00000372407 PDCL3Q9H2J4 239 aa13.37□□□□□ -0.27
PTPRF-203ENST00000372407 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.37□□□□□ -0.27
PTPRF-203ENST00000372407 F6X3S4 739 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 RAI14Q9P0K7 980 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 CEP131Q9UPN4 1083 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 AKAP2Q9Y2D5 859 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 IQCEQ6IPM2 695 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 NGLY1Q96IV0 654 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 KDM6BO15054 1643 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 LMTK3Q96Q04 1460 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 TBX22Q9Y458 520 aa13.36□□□□□ -0.27
PTPRF-203ENST00000372407 MAGI3Q5TCQ9 1506 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 KIAA0754O94854 1291 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 SSBP05455 408 aaKnown RBP eCLIP13.35□□□□□ -0.27
PTPRF-203ENST00000372407 HMGB1P09429 215 aaKnown RBP13.35□□□□□ -0.27
PTPRF-203ENST00000372407 EIF5P55010 431 aaKnown RBP13.35□□□□□ -0.27
PTPRF-203ENST00000372407 KRT28Q7Z3Y7 464 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 KIF18AQ8NI77 898 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 CNKSR2Q8WXI2 1034 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 LRRFIP2Q9Y608 721 aaKnown RBP13.35□□□□□ -0.27
PTPRF-203ENST00000372407 NME9Q86XW9 330 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 CCDC85AQ96PX6 553 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-203ENST00000372407 C19orf44Q9H6X5 657 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 EMILIN1Q9Y6C2 1016 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 METTL24Q5JXM2 366 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 DNAAF4Q8WXU2 420 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 TBC1D32Q96NH3 1257 aa13.35□□□□□ -0.27
PTPRF-203ENST00000372407 DNMT1P26358 1616 aaKnown RBP13.34□□□□□ -0.27
PTPRF-203ENST00000372407 CCDC196A0A1B0GTZ2 297 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 CTAGE5O15320 804 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 NEFHP12036 1026 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 C8orf76Q96K31 380 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 PTPRCP08575 1304 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 TBC1D9Q6ZT07 1266 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 ABCF2Q9UG63 623 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 ZSCAN12O43309 604 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 IFIT1P09914 478 aaKnown RBP13.34□□□□□ -0.27
PTPRF-203ENST00000372407 IGHMBP2P38935 993 aaKnown RBP13.34□□□□□ -0.27
PTPRF-203ENST00000372407 AMOTQ4VCS5 1084 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 TMCO3Q6UWJ1 677 aa13.34□□□□□ -0.27
PTPRF-203ENST00000372407 MLH3Q9UHC1 1453 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 STARD3NLO95772 234 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 GBP3Q9H0R5 595 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 DDX19AQ9NUU7 478 aaKnown RBP13.33□□□□□ -0.28
PTPRF-203ENST00000372407 DBF4Q9UBU7 674 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-203ENST00000372407 USP25Q9UHP3 1055 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 TTC37Q6PGP7 1564 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 RPRD2Q5VT52 1461 aaKnown RBP13.33□□□□□ -0.28
PTPRF-203ENST00000372407 FLIIQ13045 1269 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 TMEM132AQ24JP5 1023 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 ECHDC1Q9NTX5 307 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 FBXO3Q9UK99 471 aa13.33□□□□□ -0.28
PTPRF-203ENST00000372407 KIAA1328Q86T90 577 aa13.32□□□□□ -0.28
PTPRF-203ENST00000372407 CCDC8Q9H0W5 538 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-203ENST00000372407 BAG4O95429 457 aaKnown RBP13.32□□□□□ -0.28
PTPRF-203ENST00000372407 PTCD1O75127 700 aaKnown RBP13.32□□□□□ -0.28
PTPRF-203ENST00000372407 CCDC102AQ96A19 550 aa13.32□□□□□ -0.28
PTPRF-203ENST00000372407 NPHP3Q7Z494 1330 aa13.32□□□□□ -0.28
PTPRF-203ENST00000372407 IGHDP01880 384 aa13.32□□□□□ -0.28
PTPRF-203ENST00000372407 KCNA6P17658 529 aa13.32□□□□□ -0.28
PTPRF-203ENST00000372407 KLHL40Q2TBA0 621 aa13.31□□□□□ -0.28
PTPRF-203ENST00000372407 NAPBQ9H115 298 aa13.31□□□□□ -0.28
PTPRF-203ENST00000372407 CENPHQ9H3R5 247 aa13.31□□□□□ -0.28
PTPRF-203ENST00000372407 IL16Q14005 1332 aa13.31□□□□□ -0.28
PTPRF-203ENST00000372407 MCM5P33992 734 aa13.31□□□□□ -0.28
PTPRF-203ENST00000372407 PKNOX2Q96KN3 472 aa13.31□□□□□ -0.28
PTPRF-203ENST00000372407 ADGRL2O95490 1459 aa13.31□□□□□ -0.28
PTPRF-203ENST00000372407 GOLGA6L7A0A1B0GV03 622 aa13.31□□□□□ -0.28
PTPRF-203ENST00000372407 NEMFO60524 1076 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 TOP1P11387 765 aaKnown RBP13.3□□□□□ -0.28
PTPRF-203ENST00000372407 CKAP2LQ8IYA6 745 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 NSD2O96028 1365 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 URI1O94763 535 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-203ENST00000372407 KLHL34Q8N239 644 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 TAF4BQ92750 862 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 MYD88Q99836 296 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 CRACR2AQ9BSW2 395 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 CLIP2Q9UDT6 1046 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms