RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 JMYQ8N9B5 988 aa13.71□□□□□ -0.21
SYNE1-204ENST00000367248 IQSEC3Q9UPP2 1182 aaPredicted RBP13.71□□□□□ -0.22
SYNE1-204ENST00000367248 KINO60870 393 aaKnown RBP13.71□□□□□ -0.22
SYNE1-204ENST00000367248 CWC25Q9NXE8 425 aaPredicted RBP13.71□□□□□ -0.22
SYNE1-204ENST00000367248 POLR3AO14802 1390 aaPredicted RBP13.7□□□□□ -0.22
SYNE1-204ENST00000367248 K7ELQ4 463 aaPredicted RBP13.7□□□□□ -0.22
SYNE1-204ENST00000367248 IMMTQ16891 758 aaKnown RBP13.7□□□□□ -0.22
SYNE1-204ENST00000367248 ANKRD13DQ6ZTN6 518 aa13.7□□□□□ -0.22
SYNE1-204ENST00000367248 FEZ1Q99689 392 aa13.7□□□□□ -0.22
SYNE1-204ENST00000367248 OFD1O75665 1012 aa13.7□□□□□ -0.22
SYNE1-204ENST00000367248 ARHGAP45Q92619 1136 aa13.7□□□□□ -0.22
SYNE1-204ENST00000367248 SETDB2Q96T68 719 aa13.7□□□□□ -0.22
SYNE1-204ENST00000367248 SLC5A1P13866 664 aa13.7□□□□□ -0.22
SYNE1-204ENST00000367248 IL2RBP14784 551 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 CDKL5O76039 1030 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 FAM98CQ17RN3 349 aaKnown RBP13.69□□□□□ -0.22
SYNE1-204ENST00000367248 LDHAL6AQ6ZMR3 332 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 TXLNAP40222 546 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 MTHFSDQ2M296 383 aaKnown RBP13.69□□□□□ -0.22
SYNE1-204ENST00000367248 MAP3K12Q12852 859 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 OLFM4Q6UX06 510 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 CCDC82Q8N4S0 544 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 CEP170Q5SW79 1584 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 CCDC96Q2M329 555 aa13.69□□□□□ -0.22
SYNE1-204ENST00000367248 WDR33Q9C0J8 1336 aaKnown RBP13.69□□□□□ -0.22
SYNE1-204ENST00000367248 LARP1BQ659C4 914 aaKnown RBP13.68□□□□□ -0.22
SYNE1-204ENST00000367248 SMARCC1Q92922 1105 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-204ENST00000367248 ITSN2Q9NZM3 1697 aa13.68□□□□□ -0.22
SYNE1-204ENST00000367248 PPP1R42Q7Z4L9 355 aa13.68□□□□□ -0.22
SYNE1-204ENST00000367248 ZNF592Q92610 1267 aa13.68□□□□□ -0.22
SYNE1-204ENST00000367248 CARD14Q9BXL6 1004 aa13.68□□□□□ -0.22
SYNE1-204ENST00000367248 NAT10Q9H0A0 1025 aaKnown RBP13.68□□□□□ -0.22
SYNE1-204ENST00000367248 ECHDC1Q9NTX5 307 aa13.68□□□□□ -0.22
SYNE1-204ENST00000367248 PARD3Q8TEW0 1356 aa13.68□□□□□ -0.22
SYNE1-204ENST00000367248 CDC5LQ99459 802 aaKnown RBP13.68□□□□□ -0.22
SYNE1-204ENST00000367248 SNRKQ9NRH2 765 aa13.68□□□□□ -0.22
SYNE1-204ENST00000367248 PRPF40AO75400 957 aaKnown RBP13.68□□□□□ -0.22
SYNE1-204ENST00000367248 EYA1Q99502 592 aa13.68□□□□□ -0.22
SYNE1-204ENST00000367248 BRPF1P55201 1214 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-204ENST00000367248 MAP3K19Q56UN5 1328 aa13.67□□□□□ -0.22
SYNE1-204ENST00000367248 TRPM2O94759 1503 aa13.67□□□□□ -0.22
SYNE1-204ENST00000367248 U3KPZ7 1027 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-204ENST00000367248 SPDYE4A6NLX3 237 aa13.67□□□□□ -0.22
SYNE1-204ENST00000367248 XAGE3Q8WTP9 111 aa13.67□□□□□ -0.22
SYNE1-204ENST00000367248 A0A1W2PP64 1363 aa13.67□□□□□ -0.22
SYNE1-204ENST00000367248 PRPF40BQ6NWY9 871 aaKnown RBP13.67□□□□□ -0.22
SYNE1-204ENST00000367248 PARP3Q9Y6F1 533 aa13.67□□□□□ -0.22
SYNE1-204ENST00000367248 RANBP6O60518 1105 aaKnown RBP13.67□□□□□ -0.22
SYNE1-204ENST00000367248 ZNF408Q9H9D4 720 aa13.67□□□□□ -0.22
SYNE1-204ENST00000367248 UHRF1BP1Q6BDS2 1440 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 ASXL1Q8IXJ9 1541 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 COPS6Q7L5N1 327 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 CHPF2Q9P2E5 772 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 NEO1Q92859 1461 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 TTLL5Q6EMB2 1281 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 ZNF287Q9HBT7 754 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 RIMBP2O15034 1052 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 ALDH1L1O75891 902 aa13.66□□□□□ -0.22
SYNE1-204ENST00000367248 UPF3BQ9BZI7 483 aaKnown RBP13.66□□□□□ -0.22
SYNE1-204ENST00000367248 NIP7Q9Y221 180 aaKnown RBP eCLIP13.66□□□□□ -0.22
SYNE1-204ENST00000367248 NAPBQ9H115 298 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 KRT85P78386 507 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 IP6K1Q92551 441 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 GJA3Q9Y6H8 435 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 PZPP20742 1482 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 RNF214Q8ND24 703 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 NOL7Q9UMY1 257 aaKnown RBP13.65□□□□□ -0.22
SYNE1-204ENST00000367248 ADGRL2O95490 1459 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 TRAK2O60296 914 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 HOXC9P31274 260 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 CAVIN1Q6NZI2 390 aaKnown RBP13.65□□□□□ -0.22
SYNE1-204ENST00000367248 PDILTQ8N807 584 aa13.65□□□□□ -0.22
SYNE1-204ENST00000367248 C8orf58Q8NAV2 365 aa13.65□□□□□ -0.23
SYNE1-204ENST00000367248 TMEM87AQ8NBN3 555 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 SIRT1Q96EB6 747 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 DCAF5Q96JK2 942 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 ORAI2Q96SN7 254 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 RTCBQ9Y3I0 505 aaKnown RBP13.64□□□□□ -0.23
SYNE1-204ENST00000367248 MYO1BO43795 1136 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 VEZTQ9HBM0 779 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 ARHGEF12Q9NZN5 1544 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 CASTP20810 708 aaKnown RBP13.64□□□□□ -0.23
SYNE1-204ENST00000367248 ZNF444Q8N0Y2 327 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-204ENST00000367248 VTI1AQ96AJ9 217 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 JAG2Q9Y219 1238 aa13.64□□□□□ -0.23
SYNE1-204ENST00000367248 GNPATO15228 680 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 KSR2Q6VAB6 950 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 PDCL3Q9H2J4 239 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 USP21Q9UK80 565 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 ATP7AQ04656 1500 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 TMEM2Q9UHN6 1383 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 ME1P48163 572 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 LETM1O95202 739 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-204ENST00000367248 WASF1Q92558 559 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 STK32BQ9NY57 414 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 CIZ1Q9ULV3 898 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-204ENST00000367248 VAT1LQ9HCJ6 419 aa13.63□□□□□ -0.23
SYNE1-204ENST00000367248 LIG1P18858 919 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 HOMER1Q86YM7 354 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 PHACTR3Q96KR7 559 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms