RNA–Protein interactions for RNA: ENST00000351948.8

SMC6-201, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,173 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-201ENST00000351948 NBPF6Q5VWK0 638 aa16.33■□□□□ 0.21
SMC6-201ENST00000351948 NBPF5PQ86XG9 351 aaPredicted RBP16.33■□□□□ 0.21
SMC6-201ENST00000351948 NBPF4Q96M43 638 aa16.33■□□□□ 0.21
SMC6-201ENST00000351948 ARHGEF5Q12774 1597 aa16.33■□□□□ 0.2
SMC6-201ENST00000351948 GOLIM4O00461 696 aa16.33■□□□□ 0.2
SMC6-201ENST00000351948 PRPF40AO75400 957 aaKnown RBP16.33■□□□□ 0.2
SMC6-201ENST00000351948 RNF214Q8ND24 703 aa16.33■□□□□ 0.2
SMC6-201ENST00000351948 PDRG1Q9NUG6 133 aa16.33■□□□□ 0.2
SMC6-201ENST00000351948 XBP1P17861 261 aa16.33■□□□□ 0.2
SMC6-201ENST00000351948 SLC4A8Q2Y0W8 1093 aa16.33■□□□□ 0.2
SMC6-201ENST00000351948 MAP3K5Q99683 1374 aa16.33■□□□□ 0.2
SMC6-201ENST00000351948 BRMS1Q9HCU9 246 aa16.32■□□□□ 0.2
SMC6-201ENST00000351948 PA2G4Q9UQ80 394 aaKnown RBP16.32■□□□□ 0.2
SMC6-201ENST00000351948 RNMTO43148 476 aaKnown RBP16.32■□□□□ 0.2
SMC6-201ENST00000351948 LMBR1LQ6UX01 489 aa16.32■□□□□ 0.2
SMC6-201ENST00000351948 DDX11Q96FC9 970 aa16.32■□□□□ 0.2
SMC6-201ENST00000351948 CCDC69A6NI79 296 aa16.32■□□□□ 0.2
SMC6-201ENST00000351948 CCDC43Q96MW1 224 aaKnown RBP16.32■□□□□ 0.2
SMC6-201ENST00000351948 SDF4Q9BRK5 362 aa16.32■□□□□ 0.2
SMC6-201ENST00000351948 ZNF622Q969S3 477 aaKnown RBP eCLIP16.32■□□□□ 0.23e-7■■■□□ 19.1
SMC6-201ENST00000351948 EDC4Q6P2E9 1401 aaKnown RBP16.31■□□□□ 0.2
SMC6-201ENST00000351948 K7ELQ4 463 aaPredicted RBP16.31■□□□□ 0.2
SMC6-201ENST00000351948 UBAC1Q9BSL1 405 aa16.31■□□□□ 0.2
SMC6-201ENST00000351948 DCAF5Q96JK2 942 aa16.31■□□□□ 0.2
SMC6-201ENST00000351948 PTPRTO14522 1441 aa16.31■□□□□ 0.2
SMC6-201ENST00000351948 G2E3Q7L622 706 aa16.31■□□□□ 0.2
SMC6-201ENST00000351948 NIP7Q9Y221 180 aaKnown RBP eCLIP16.31■□□□□ 0.2
SMC6-201ENST00000351948 FAM98CQ17RN3 349 aaKnown RBP16.3■□□□□ 0.2
SMC6-201ENST00000351948 MCM2P49736 904 aa16.3■□□□□ 0.2
SMC6-201ENST00000351948 CAVIN1Q6NZI2 390 aaKnown RBP16.3■□□□□ 0.2
SMC6-201ENST00000351948 SLC5A1P13866 664 aa16.3■□□□□ 0.2
SMC6-201ENST00000351948 DZIP1Q86YF9 867 aaKnown RBP16.3■□□□□ 0.2
SMC6-201ENST00000351948 KSR2Q6VAB6 950 aa16.3■□□□□ 0.2
SMC6-201ENST00000351948 PCMTD1Q96MG8 357 aaPredicted RBP16.3■□□□□ 0.2
SMC6-201ENST00000351948 PIK3C2GO75747 1445 aa16.29■□□□□ 0.2
SMC6-201ENST00000351948 CCDC82Q8N4S0 544 aa16.29■□□□□ 0.2
SMC6-201ENST00000351948 GRM8O00222 908 aa16.29■□□□□ 0.2
SMC6-201ENST00000351948 C16orf71Q8IYS4 520 aaPredicted RBP16.29■□□□□ 0.2
SMC6-201ENST00000351948 ECHDC1Q9NTX5 307 aa16.29■□□□□ 0.2
SMC6-201ENST00000351948 SASS6Q6UVJ0 657 aa16.29■□□□□ 0.2
SMC6-201ENST00000351948 DDX46Q7L014 1031 aaKnown RBP16.29■□□□□ 0.2
SMC6-201ENST00000351948 PPFIA3O75145 1194 aa16.29■□□□□ 0.2
SMC6-201ENST00000351948 USP5P45974 858 aa16.29■□□□□ 0.2
SMC6-201ENST00000351948 LARP1BQ659C4 914 aaKnown RBP16.29■□□□□ 0.2
SMC6-201ENST00000351948 DZIP3Q86Y13 1208 aaKnown RBP16.29■□□□□ 0.2
SMC6-201ENST00000351948 CTNNA3Q9UI47 895 aa16.29■□□□□ 0.2
SMC6-201ENST00000351948 IMMTQ16891 758 aaKnown RBP16.28■□□□□ 0.2
SMC6-201ENST00000351948 ZFYVE9O95405 1425 aa16.28■□□□□ 0.2
SMC6-201ENST00000351948 DCAF8L1A6NGE4 600 aa16.28■□□□□ 0.2
SMC6-201ENST00000351948 RHPN1Q8TCX5 695 aa16.28■□□□□ 0.2
SMC6-201ENST00000351948 PDCP20941 246 aa16.28■□□□□ 0.2
SMC6-201ENST00000351948 SBNO1A3KN83 1393 aa16.28■□□□□ 0.2
SMC6-201ENST00000351948 TMEM94Q12767 1356 aa16.28■□□□□ 0.2
SMC6-201ENST00000351948 MPHOSPH10O00566 681 aaKnown RBP16.27■□□□□ 0.2
SMC6-201ENST00000351948 FERMT3Q86UX7 667 aa16.27■□□□□ 0.2
SMC6-201ENST00000351948 HELBQ8NG08 1087 aaPredicted RBP16.27■□□□□ 0.2
SMC6-201ENST00000351948 SETDB2Q96T68 719 aa16.27■□□□□ 0.2
SMC6-201ENST00000351948 NAPBQ9H115 298 aa16.27■□□□□ 0.2
SMC6-201ENST00000351948 PLEKHG3A1L390 1219 aa16.27■□□□□ 0.19
SMC6-201ENST00000351948 TRIM22Q8IYM9 498 aa16.27■□□□□ 0.19
SMC6-201ENST00000351948 ADGBQ8N7X0 1667 aa16.27■□□□□ 0.19
SMC6-201ENST00000351948 MAP3K12Q12852 859 aa16.27■□□□□ 0.19
SMC6-201ENST00000351948 STK38Q15208 465 aa16.27■□□□□ 0.19
SMC6-201ENST00000351948 HAND2P61296 217 aa16.26■□□□□ 0.19
SMC6-201ENST00000351948 GLIPR1L2Q4G1C9 344 aa16.26■□□□□ 0.19
SMC6-201ENST00000351948 CDC5LQ99459 802 aaKnown RBP16.26■□□□□ 0.19
SMC6-201ENST00000351948 MLH3Q9UHC1 1453 aa16.26■□□□□ 0.19
SMC6-201ENST00000351948 PCDH11XQ9BZA7 1347 aa16.26■□□□□ 0.19
SMC6-201ENST00000351948 PCDH11YQ9BZA8 1340 aa16.26■□□□□ 0.19
SMC6-201ENST00000351948 POLR3DP05423 398 aaPredicted RBP16.26■□□□□ 0.19
SMC6-201ENST00000351948 ARHGAP45Q92619 1136 aa16.26■□□□□ 0.19
SMC6-201ENST00000351948 CCDC83Q8IWF9 413 aa16.26■□□□□ 0.19
SMC6-201ENST00000351948 ANKRD1Q15327 319 aa16.25■□□□□ 0.19
SMC6-201ENST00000351948 CCDC47Q96A33 483 aaKnown RBP16.25■□□□□ 0.19
SMC6-201ENST00000351948 TRIM35Q9UPQ4 493 aa16.25■□□□□ 0.19
SMC6-201ENST00000351948 TRAK2O60296 914 aa16.25■□□□□ 0.19
SMC6-201ENST00000351948 ZNF790Q6PG37 636 aa16.25■□□□□ 0.19
SMC6-201ENST00000351948 TBC1D9Q6ZT07 1266 aa16.25■□□□□ 0.19
SMC6-201ENST00000351948 TFCP2L1Q9NZI6 479 aa16.25■□□□□ 0.19
SMC6-201ENST00000351948 PRIM1P49642 420 aaKnown RBP16.25■□□□□ 0.19
SMC6-201ENST00000351948 NOC3LQ8WTT2 800 aaKnown RBP16.25■□□□□ 0.19
SMC6-201ENST00000351948 GCC2Q8IWJ2 1684 aa16.24■□□□□ 0.19
SMC6-201ENST00000351948 CCAR1Q8IX12 1150 aaKnown RBP16.24■□□□□ 0.19
SMC6-201ENST00000351948 HOOK1Q9UJC3 728 aaKnown RBP16.24■□□□□ 0.19
SMC6-201ENST00000351948 RANBP6O60518 1105 aaKnown RBP16.24■□□□□ 0.19
SMC6-201ENST00000351948 A1BGP04217 495 aa16.24■□□□□ 0.19
SMC6-201ENST00000351948 ROBO2Q9HCK4 1378 aa16.23■□□□□ 0.19
SMC6-201ENST00000351948 RAB11FIP4Q86YS3 637 aa16.23■□□□□ 0.19
SMC6-201ENST00000351948 SMARCC1Q92922 1105 aaPredicted RBP16.23■□□□□ 0.19
SMC6-201ENST00000351948 TSR1Q2NL82 804 aaKnown RBP16.23■□□□□ 0.19
SMC6-201ENST00000351948 MKNK2Q9HBH9 465 aa16.23■□□□□ 0.19
SMC6-201ENST00000351948 U3KPZ7 1027 aaPredicted RBP16.23■□□□□ 0.19
SMC6-201ENST00000351948 LINS1Q8NG48 757 aa16.23■□□□□ 0.19
SMC6-201ENST00000351948 PREX2Q70Z35 1606 aa16.23■□□□□ 0.19
SMC6-201ENST00000351948 GNPATO15228 680 aa16.23■□□□□ 0.19
SMC6-201ENST00000351948 EFCAB6Q5THR3 1501 aa16.23■□□□□ 0.19
SMC6-201ENST00000351948 ME1P48163 572 aa16.22■□□□□ 0.19
SMC6-201ENST00000351948 CCDC152Q4G0S7 254 aa16.22■□□□□ 0.19
SMC6-201ENST00000351948 CCDC24Q8N4L8 307 aa16.22■□□□□ 0.19
SMC6-201ENST00000351948 FAM89AQ96GI7 184 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms