RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TSPYL4Q9UJ04 414 aa27.07■■□□□ 1.92
TRIM28-202ENST00000341753 SALL3Q9BXA9 1300 aa27.07■■□□□ 1.92
TRIM28-202ENST00000341753 ARHGAP23Q9P227 1491 aa27.07■■□□□ 1.92
TRIM28-202ENST00000341753 PRDM10Q9NQV6 1147 aa27.06■■□□□ 1.92
TRIM28-202ENST00000341753 TTC12Q9H892 705 aaPredicted RBP27.06■■□□□ 1.92
TRIM28-202ENST00000341753 INTS4Q96HW7 963 aaKnown RBP27.05■■□□□ 1.92
TRIM28-202ENST00000341753 SLIT1O75093 1534 aa27.05■■□□□ 1.92
TRIM28-202ENST00000341753 CCT4P50991 539 aaKnown RBP27.05■■□□□ 1.92
TRIM28-202ENST00000341753 IL1RAPL2Q9NP60 686 aa27.05■■□□□ 1.92
TRIM28-202ENST00000341753 TTC21AQ8NDW8 1320 aa27.05■■□□□ 1.92
TRIM28-202ENST00000341753 CNPY2Q9Y2B0 182 aa27.04■■□□□ 1.92
TRIM28-202ENST00000341753 CEP170BQ9Y4F5 1589 aaPredicted RBP27.04■■□□□ 1.92
TRIM28-202ENST00000341753 CRB1P82279 1406 aa27.04■■□□□ 1.92
TRIM28-202ENST00000341753 FAM177BA6PVY3 158 aa27.04■■□□□ 1.92
TRIM28-202ENST00000341753 RTF1Q92541 710 aaKnown RBP27.04■■□□□ 1.92
TRIM28-202ENST00000341753 SRCIN1Q9C0H9 1055 aa27.04■■□□□ 1.92
TRIM28-202ENST00000341753 NALCNQ8IZF0 1738 aa27.04■■□□□ 1.92
TRIM28-202ENST00000341753 USHBP1Q8N6Y0 703 aa27.03■■□□□ 1.92
TRIM28-202ENST00000341753 FLT4P35916 1363 aa27.03■■□□□ 1.92
TRIM28-202ENST00000341753 HCLS1P14317 486 aaPredicted RBP27.03■■□□□ 1.92
TRIM28-202ENST00000341753 FER1L4A9Z1Z3 1794 aa27.02■■□□□ 1.92
TRIM28-202ENST00000341753 SBNO1A3KN83 1393 aa27.02■■□□□ 1.92
TRIM28-202ENST00000341753 PLCB2Q00722 1185 aa27.02■■□□□ 1.92
TRIM28-202ENST00000341753 ABTB2Q8N961 1025 aa27.02■■□□□ 1.92
TRIM28-202ENST00000341753 PRDM4Q9UKN5 801 aa27.02■■□□□ 1.92
TRIM28-202ENST00000341753 FKBP5Q13451 457 aaPredicted RBP27.01■■□□□ 1.91
TRIM28-202ENST00000341753 NUTM1Q86Y26 1132 aa27.01■■□□□ 1.91
TRIM28-202ENST00000341753 RGPD1P0DJD0 1748 aa27.01■■□□□ 1.91
TRIM28-202ENST00000341753 PHF14O94880 888 aa27.01■■□□□ 1.91
TRIM28-202ENST00000341753 ADCY5O95622 1261 aa27.01■■□□□ 1.91
TRIM28-202ENST00000341753 ANAPC15P60006 121 aa27.01■■□□□ 1.91
TRIM28-202ENST00000341753 WDR33Q9C0J8 1336 aaKnown RBP27.01■■□□□ 1.91
TRIM28-202ENST00000341753 ARHGEF10O15013 1369 aa27■■□□□ 1.91
TRIM28-202ENST00000341753 LRRFIP2Q9Y608 721 aaKnown RBP27■■□□□ 1.91
TRIM28-202ENST00000341753 PIK3C2AO00443 1686 aa26.99■■□□□ 1.91
TRIM28-202ENST00000341753 RPAP1Q9BWH6 1393 aaPredicted RBP26.98■■□□□ 1.91
TRIM28-202ENST00000341753 HOXC9P31274 260 aa26.97■■□□□ 1.91
TRIM28-202ENST00000341753 NOLC1Q14978 699 aaKnown RBP eCLIP26.97■■□□□ 1.915e-7■■□□□ 14.3
TRIM28-202ENST00000341753 MYRIPQ8NFW9 859 aa26.97■■□□□ 1.91
TRIM28-202ENST00000341753 STK31Q9BXU1 1019 aa26.97■■□□□ 1.91
TRIM28-202ENST00000341753 IGSF1Q8N6C5 1336 aa26.97■■□□□ 1.91
TRIM28-202ENST00000341753 FIBPO43427 364 aa26.96■■□□□ 1.91
TRIM28-202ENST00000341753 ATP8B2P98198 1209 aa26.96■■□□□ 1.91
TRIM28-202ENST00000341753 FLIIQ13045 1269 aa26.96■■□□□ 1.91
TRIM28-202ENST00000341753 TCHHQ07283 1943 aa26.96■■□□□ 1.91
TRIM28-202ENST00000341753 CCDC183Q5T5S1 534 aa26.96■■□□□ 1.91
TRIM28-202ENST00000341753 PIBF1Q8WXW3 757 aa26.96■■□□□ 1.91
TRIM28-202ENST00000341753 CPA1P15085 419 aa26.95■■□□□ 1.9
TRIM28-202ENST00000341753 MTERF4Q7Z6M4 381 aaKnown RBP26.94■■□□□ 1.9
TRIM28-202ENST00000341753 HSPA4P34932 840 aa26.93■■□□□ 1.9
TRIM28-202ENST00000341753 FMN2Q9NZ56 1722 aa26.93■■□□□ 1.9
TRIM28-202ENST00000341753 GNAI3P08754 354 aa26.93■■□□□ 1.9
TRIM28-202ENST00000341753 GIMAP6Q6P9H5 292 aa26.93■■□□□ 1.9
TRIM28-202ENST00000341753 ZNF710Q8N1W2 664 aa26.93■■□□□ 1.9
TRIM28-202ENST00000341753 KDRP35968 1356 aa26.93■■□□□ 1.9
TRIM28-202ENST00000341753 STAP2Q9UGK3 403 aa26.92■■□□□ 1.9
TRIM28-202ENST00000341753 FAM184AQ8NB25 1140 aa26.92■■□□□ 1.9
TRIM28-202ENST00000341753 ZSCAN22P10073 491 aaPredicted RBP26.91■■□□□ 1.9
TRIM28-202ENST00000341753 AK2P54819 239 aa26.91■■□□□ 1.9
TRIM28-202ENST00000341753 RASEFQ8IZ41 740 aa26.91■■□□□ 1.9
TRIM28-202ENST00000341753 SYT1P21579 422 aa26.9■■□□□ 1.9
TRIM28-202ENST00000341753 UVSSAQ2YD98 709 aa26.9■■□□□ 1.9
TRIM28-202ENST00000341753 SNX14Q9Y5W7 946 aa26.9■■□□□ 1.9
TRIM28-202ENST00000341753 IL17REQ8NFR9 667 aa26.89■■□□□ 1.9
TRIM28-202ENST00000341753 CCDC94Q9BW85 323 aaPredicted RBP26.89■■□□□ 1.9
TRIM28-202ENST00000341753 XRN1Q8IZH2 1706 aaKnown RBP26.89■■□□□ 1.89
TRIM28-202ENST00000341753 STX6O43752 255 aa26.89■■□□□ 1.89
TRIM28-202ENST00000341753 RUFY3Q7L099 469 aa26.89■■□□□ 1.89
TRIM28-202ENST00000341753 AP5Z1O43299 807 aa26.88■■□□□ 1.89
TRIM28-202ENST00000341753 SPG7Q9UQ90 795 aa26.88■■□□□ 1.89
TRIM28-202ENST00000341753 SETD1BQ9UPS6 1966 aaKnown RBP26.88■■□□□ 1.89
TRIM28-202ENST00000341753 GNAT3A8MTJ3 354 aa26.88■■□□□ 1.89
TRIM28-202ENST00000341753 LARGE1O95461 756 aa26.88■■□□□ 1.89
TRIM28-202ENST00000341753 PHF8Q9UPP1 1060 aa26.88■■□□□ 1.89
TRIM28-202ENST00000341753 SURF6O75683 361 aaKnown RBP26.87■■□□□ 1.89
TRIM28-202ENST00000341753 TMEM87AQ8NBN3 555 aa26.87■■□□□ 1.89
TRIM28-202ENST00000341753 TUBGCP6Q96RT7 1819 aa26.87■■□□□ 1.89
TRIM28-202ENST00000341753 KDM4AO75164 1064 aa26.87■■□□□ 1.89
TRIM28-202ENST00000341753 UBE2HP62256 183 aa26.87■■□□□ 1.89
TRIM28-202ENST00000341753 SMAP1Q8IYB5 467 aaPredicted RBP26.87■■□□□ 1.89
TRIM28-202ENST00000341753 SPC24Q8NBT2 197 aa26.87■■□□□ 1.89
TRIM28-202ENST00000341753 USP44Q9H0E7 712 aa26.87■■□□□ 1.89
TRIM28-202ENST00000341753 ZHX1Q9UKY1 873 aaPredicted RBP26.86■■□□□ 1.89
TRIM28-202ENST00000341753 UBTFL1P0CB47 393 aaPredicted RBP26.86■■□□□ 1.89
TRIM28-202ENST00000341753 ESCO1Q5FWF5 840 aa26.86■■□□□ 1.89
TRIM28-202ENST00000341753 CWC27Q6UX04 472 aaKnown RBP26.86■■□□□ 1.89
TRIM28-202ENST00000341753 DDX54Q8TDD1 881 aaKnown RBP26.86■■□□□ 1.89
TRIM28-202ENST00000341753 SMC3Q9UQE7 1217 aa26.86■■□□□ 1.89
TRIM28-202ENST00000341753 PRIMPOLQ96LW4 560 aa26.85■■□□□ 1.89
TRIM28-202ENST00000341753 F13A1P00488 732 aa26.85■■□□□ 1.89
TRIM28-202ENST00000341753 DNM1Q05193 864 aaKnown RBP26.85■■□□□ 1.89
TRIM28-202ENST00000341753 TTC14Q96N46 770 aa26.85■■□□□ 1.89
TRIM28-202ENST00000341753 RAD50Q92878 1312 aa26.85■■□□□ 1.89
TRIM28-202ENST00000341753 CCDC30Q5VVM6 783 aa26.84■■□□□ 1.89
TRIM28-202ENST00000341753 SGSM2O43147 1006 aa26.84■■□□□ 1.89
TRIM28-202ENST00000341753 CBX1P83916 185 aa26.84■■□□□ 1.89
TRIM28-202ENST00000341753 CCDC83Q8IWF9 413 aa26.84■■□□□ 1.89
TRIM28-202ENST00000341753 PYCARDQ9ULZ3 195 aa26.84■■□□□ 1.89
TRIM28-202ENST00000341753 IL17RAQ96F46 866 aa26.83■■□□□ 1.89
TRIM28-202ENST00000341753 CHMP3Q9Y3E7 222 aa26.83■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms