RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 AMER1Q5JTC6 1135 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-201ENST00000301897 LGR6Q9HBX8 967 aa20.04■□□□□ 0.8
CCDC88B-201ENST00000301897 NARFQ9UHQ1 456 aa20.04■□□□□ 0.8
CCDC88B-201ENST00000301897 VIRMAQ69YN4 1812 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-201ENST00000301897 TNRC6CQ9HCJ0 1690 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-201ENST00000301897 WDR90Q96KV7 1748 aa20.03■□□□□ 0.8
CCDC88B-201ENST00000301897 COL15A1P39059 1388 aa20.03■□□□□ 0.8
CCDC88B-201ENST00000301897 KCPQ6ZWJ8 1503 aa20.02■□□□□ 0.79
CCDC88B-201ENST00000301897 AFDNP55196 1824 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-201ENST00000301897 NRXN2Q9P2S2 1712 aa20.01■□□□□ 0.79
CCDC88B-201ENST00000301897 HMOX1P09601 288 aa20■□□□□ 0.79
CCDC88B-201ENST00000301897 SLC39A6Q13433 755 aa20■□□□□ 0.79
CCDC88B-201ENST00000301897 NFIXQ14938 502 aa20■□□□□ 0.79
CCDC88B-201ENST00000301897 DIAPH1O60610 1272 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-201ENST00000301897 STARD3NLO95772 234 aa19.99■□□□□ 0.79
CCDC88B-201ENST00000301897 ZBTB1Q9Y2K1 713 aa19.99■□□□□ 0.79
CCDC88B-201ENST00000301897 DLEC1Q9Y238 1755 aa19.98■□□□□ 0.79
CCDC88B-201ENST00000301897 A0A087WZG4 1122 aa19.98■□□□□ 0.79
CCDC88B-201ENST00000301897 LMNB1P20700 586 aa19.98■□□□□ 0.79
CCDC88B-201ENST00000301897 TTC5Q8N0Z6 440 aa19.98■□□□□ 0.79
CCDC88B-201ENST00000301897 TTLL6Q8N841 843 aa19.98■□□□□ 0.79
CCDC88B-201ENST00000301897 RRAGCQ9HB90 399 aa19.98■□□□□ 0.79
CCDC88B-201ENST00000301897 SERPINB2P05120 415 aa19.97■□□□□ 0.79
CCDC88B-201ENST00000301897 MTHFSDQ2M296 383 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-201ENST00000301897 SMC1BQ8NDV3 1235 aa19.97■□□□□ 0.79
CCDC88B-201ENST00000301897 CCER1Q8TC90 406 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-201ENST00000301897 KLRG1Q96E93 195 aa19.97■□□□□ 0.79
CCDC88B-201ENST00000301897 PDZRN3Q9UPQ7 1066 aa19.97■□□□□ 0.79
CCDC88B-201ENST00000301897 UBR2Q8IWV8 1755 aa19.97■□□□□ 0.79
CCDC88B-201ENST00000301897 TEX13AQ9BXU3 409 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-201ENST00000301897 H0YIN7 160 aa19.95■□□□□ 0.78
CCDC88B-201ENST00000301897 JMYQ8N9B5 988 aa19.95■□□□□ 0.78
CCDC88B-201ENST00000301897 BCL2L12Q9HB09 334 aa19.95■□□□□ 0.78
CCDC88B-201ENST00000301897 KIF7Q2M1P5 1343 aa19.95■□□□□ 0.78
CCDC88B-201ENST00000301897 CANXP27824 592 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-201ENST00000301897 RASSF7Q02833 373 aa19.94■□□□□ 0.78
CCDC88B-201ENST00000301897 C2CD5Q86YS7 1000 aa19.94■□□□□ 0.78
CCDC88B-201ENST00000301897 GLTPD2A6NH11 291 aa19.93■□□□□ 0.78
CCDC88B-201ENST00000301897 VEGFAP15692 232 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-201ENST00000301897 EIF5P55010 431 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-201ENST00000301897 TEFQ10587 303 aa19.93■□□□□ 0.78
CCDC88B-201ENST00000301897 PER1O15534 1290 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-201ENST00000301897 GAS2L2Q8NHY3 880 aa19.92■□□□□ 0.78
CCDC88B-201ENST00000301897 PDE6BP35913 854 aa19.91■□□□□ 0.78
CCDC88B-201ENST00000301897 NPM2Q86SE8 214 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-201ENST00000301897 PCNTO95613 3336 aa19.91■□□□□ 0.78
CCDC88B-201ENST00000301897 NPC1L1Q9UHC9 1359 aa19.91■□□□□ 0.78
CCDC88B-201ENST00000301897 CCDC88AQ3V6T2 1871 aa19.9■□□□□ 0.78
CCDC88B-201ENST00000301897 GNAT3A8MTJ3 354 aa19.9■□□□□ 0.78
CCDC88B-201ENST00000301897 CC2D1BQ5T0F9 858 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-201ENST00000301897 ZNF790Q6PG37 636 aa19.9■□□□□ 0.78
CCDC88B-201ENST00000301897 BRIP1Q9BX63 1249 aa19.9■□□□□ 0.78
CCDC88B-201ENST00000301897 DPY19L2Q6NUT2 758 aa19.89■□□□□ 0.77
CCDC88B-201ENST00000301897 BICDL1Q6ZP65 573 aa19.89■□□□□ 0.77
CCDC88B-201ENST00000301897 TIAM2Q8IVF5 1701 aa19.89■□□□□ 0.77
CCDC88B-201ENST00000301897 CARMIL3Q8ND23 1372 aa19.89■□□□□ 0.77
CCDC88B-201ENST00000301897 HEG1Q9ULI3 1381 aa19.89■□□□□ 0.77
CCDC88B-201ENST00000301897 SCN7AQ01118 1682 aa19.88■□□□□ 0.77
CCDC88B-201ENST00000301897 IL6STP40189 918 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-201ENST00000301897 HTRA3P83110 453 aa19.88■□□□□ 0.77
CCDC88B-201ENST00000301897 ZNF496Q96IT1 587 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-201ENST00000301897 NFKBIEO00221 500 aa19.87■□□□□ 0.77
CCDC88B-201ENST00000301897 U2SURPO15042 1029 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-201ENST00000301897 ZNF622Q969S3 477 aaKnown RBP eCLIP19.87■□□□□ 0.77
CCDC88B-201ENST00000301897 FMNL2Q96PY5 1086 aa19.87■□□□□ 0.77
CCDC88B-201ENST00000301897 SIPA1L3O60292 1781 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-201ENST00000301897 COL3A1P02461 1466 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-201ENST00000301897 TBC1D9BQ66K14 1250 aa19.86■□□□□ 0.77
CCDC88B-201ENST00000301897 IL17REQ8NFR9 667 aa19.86■□□□□ 0.77
CCDC88B-201ENST00000301897 DICER1Q9UPY3 1922 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-201ENST00000301897 ANKRD31Q8N7Z5 1873 aa19.86■□□□□ 0.77
CCDC88B-201ENST00000301897 PRELPP51888 382 aa19.85■□□□□ 0.77
CCDC88B-201ENST00000301897 SETDB2Q96T68 719 aa19.85■□□□□ 0.77
CCDC88B-201ENST00000301897 ZNF330Q9Y3S2 320 aaPredicted RBP19.85■□□□□ 0.77
CCDC88B-201ENST00000301897 FER1L6Q2WGJ9 1857 aa19.84■□□□□ 0.77
CCDC88B-201ENST00000301897 LTBP3Q9NS15 1303 aa19.84■□□□□ 0.77
CCDC88B-201ENST00000301897 NPHP1O15259 732 aa19.84■□□□□ 0.77
CCDC88B-201ENST00000301897 SOGA3Q5TF21 947 aa19.84■□□□□ 0.77
CCDC88B-201ENST00000301897 PRR5LQ6MZQ0 368 aa19.84■□□□□ 0.77
CCDC88B-201ENST00000301897 TBC1D2BQ9UPU7 963 aa19.84■□□□□ 0.77
CCDC88B-201ENST00000301897 CEMIPQ8WUJ3 1361 aa19.83■□□□□ 0.77
CCDC88B-201ENST00000301897 ST5P78524 1137 aa19.83■□□□□ 0.77
CCDC88B-201ENST00000301897 CNBD1Q8NA66 436 aa19.83■□□□□ 0.77
CCDC88B-201ENST00000301897 CNKSR1Q969H4 720 aa19.83■□□□□ 0.77
CCDC88B-201ENST00000301897 C21orf2O43822 256 aa19.82■□□□□ 0.76
CCDC88B-201ENST00000301897 ERFEQ4G0M1 354 aa19.82■□□□□ 0.76
CCDC88B-201ENST00000301897 STYK1Q6J9G0 422 aa19.82■□□□□ 0.76
CCDC88B-201ENST00000301897 CFAP53Q96M91 514 aa19.82■□□□□ 0.76
CCDC88B-201ENST00000301897 COL11A2P13942 1736 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-201ENST00000301897 BTBD11A6QL63 1104 aa19.8■□□□□ 0.76
CCDC88B-201ENST00000301897 CAMTA2O94983 1202 aa19.8■□□□□ 0.76
CCDC88B-201ENST00000301897 A1BGP04217 495 aa19.8■□□□□ 0.76
CCDC88B-201ENST00000301897 TAOK3Q9H2K8 898 aa19.8■□□□□ 0.76
CCDC88B-201ENST00000301897 COL13A1Q5TAT6 717 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-201ENST00000301897 CLEC4GQ6UXB4 293 aa19.79■□□□□ 0.76
CCDC88B-201ENST00000301897 DZIP3Q86Y13 1208 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-201ENST00000301897 MASTLQ96GX5 879 aa19.79■□□□□ 0.76
CCDC88B-201ENST00000301897 NUDCQ9Y266 331 aa19.79■□□□□ 0.76
CCDC88B-201ENST00000301897 ZNF652Q9Y2D9 606 aa19.79■□□□□ 0.76
CCDC88B-201ENST00000301897 BCORQ6W2J9 1755 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms