RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CCDC129Q6ZRS4 1044 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 CPLX4Q7Z7G2 160 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 NUTM2FA1L443 756 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 LRSAM1Q6UWE0 723 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 SMIM23A6NLE4 172 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 ATP11AP98196 1134 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 COG3Q96JB2 828 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 GNAI1P63096 354 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 UVSSAQ2YD98 709 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 TEFQ10587 303 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 B4GALNT4Q76KP1 1039 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 SOGA3Q5TF21 947 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 HDXQ7Z353 690 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 ZNF853P0CG23 659 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 CTAGE15A4D2H0 777 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 CTAGE8P0CG41 777 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 FKBP15Q5T1M5 1219 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 CTAGE6Q86UF2 777 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 CTAGE4Q8IX94 777 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 CWC25Q9NXE8 425 aaPredicted RBP13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 CCDC144AA2RUR9 1427 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 ZNF165P49910 485 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 ATP6V1AP38606 617 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 ZNF428Q96B54 188 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 CTAGE9A4FU28 777 aa13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 DDX54Q8TDD1 881 aaKnown RBP13.55□□□□□ -0.24
SHROOM3-201ENST00000296043 POTEDQ86YR6 584 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 CKAP4Q07065 602 aaKnown RBP13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 TRIM4Q9C037 500 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 TAOK3Q9H2K8 898 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 GBP1P32455 592 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 DDX58O95786 925 aaKnown RBP13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 PPARDQ03181 441 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 CCDC155Q8N6L0 562 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 AIMP1Q12904 312 aaKnown RBP13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 CCDC186Q7Z3E2 898 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 SCAND2PQ9GZW5 306 aaPredicted RBP13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 USH1CQ9Y6N9 552 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 WDR97A6NE52 1622 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 PPP2R5AQ15172 486 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 RBBP5Q15291 538 aaKnown RBP13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 KLHL40Q2TBA0 621 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 ZNF365Q70YC5 407 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 CACNA2D4Q7Z3S7 1137 aa13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 CCDC97Q96F63 343 aaPredicted RBP13.54□□□□□ -0.24
SHROOM3-201ENST00000296043 MVPQ14764 893 aaKnown RBP13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 PTGS1P23219 599 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 CCDC69A6NI79 296 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 ERCC3P19447 782 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 HPDP32754 393 aaPredicted RBP13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 IKQ13123 557 aaPredicted RBP13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 NGDNQ8NEJ9 315 aaKnown RBP13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 LUC7L2Q9Y383 392 aaKnown RBP13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 PLEKHH1Q9ULM0 1364 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 ANO6Q4KMQ2 910 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 LARP1Q6PKG0 1096 aaKnown RBP13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 ELF2Q15723 593 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 DDX27Q96GQ7 796 aaKnown RBP13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 DMTNQ08495 405 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 HOMER2Q9NSB8 354 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 STIM2Q9P246 746 aa13.53□□□□□ -0.24
SHROOM3-201ENST00000296043 CTAGE5O15320 804 aa13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 TMEM57Q8N5G2 664 aa13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 SAMD15Q9P1V8 674 aa13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 NOL7Q9UMY1 257 aaKnown RBP13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 PRIM1P49642 420 aaKnown RBP13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 MICAL1Q8TDZ2 1067 aa13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 TTC5Q8N0Z6 440 aa13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 TSNAXIP1Q2TAA8 658 aa13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 GBP5Q96PP8 586 aa13.52□□□□□ -0.24
SHROOM3-201ENST00000296043 CFAP58Q5T655 872 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 PUF60Q9UHX1 559 aaKnown RBP13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 GBP7Q8N8V2 638 aaPredicted RBP13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 VPS36Q86VN1 386 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 TACC1O75410 805 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 GNAI2P04899 355 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 TRIM68Q6AZZ1 485 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 CCDC50Q8IVM0 306 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 STMN2Q93045 179 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 UBAC1Q9BSL1 405 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 ANAPC4Q9UJX5 808 aa13.52□□□□□ -0.25
SHROOM3-201ENST00000296043 LARP6Q9BRS8 491 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 CDKL5O76039 1030 aa13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 NOP2P46087 812 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 CCDC158Q5M9N0 1113 aa13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 CNPY4Q8N129 248 aa13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 RIOK3O14730 519 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 RABGAP1Q9Y3P9 1069 aa13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 MRFAP1L1Q96HT8 127 aa13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 CIB2O75838 187 aa13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 SMC6Q96SB8 1091 aa13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 ZWINTO95229 277 aa13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 EXOSC9Q06265 439 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-201ENST00000296043 EHBP1Q8NDI1 1231 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 PPP2R3AQ06190 1150 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 C20orf194Q5TEA3 1177 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 MYO1BO43795 1136 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 TDRD12Q587J7 1177 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 HSP90AA4PQ58FG1 418 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 CNPY2Q9Y2B0 182 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms