RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 FMNL2Q96PY5 1086 aa19.03■□□□□ 0.64
SF3B4-201ENST00000271628 SEC24BO95487 1268 aa19.02■□□□□ 0.64
SF3B4-201ENST00000271628 SNRPA1P09661 255 aaKnown RBP19.02■□□□□ 0.64
SF3B4-201ENST00000271628 KSR2Q6VAB6 950 aa19.02■□□□□ 0.64
SF3B4-201ENST00000271628 COL22A1Q8NFW1 1626 aaPredicted RBP19.02■□□□□ 0.64
SF3B4-201ENST00000271628 PRAMEF22A3QJZ6 481 aa19.02■□□□□ 0.63
SF3B4-201ENST00000271628 BTG4Q9NY30 223 aa19.02■□□□□ 0.63
SF3B4-201ENST00000271628 ADCY9O60503 1353 aa19.01■□□□□ 0.63
SF3B4-201ENST00000271628 ANXA1P04083 346 aa19.01■□□□□ 0.63
SF3B4-201ENST00000271628 ZNF496Q96IT1 587 aaPredicted RBP19.01■□□□□ 0.63
SF3B4-201ENST00000271628 COL14A1Q05707 1796 aaKnown RBP19.01■□□□□ 0.63
SF3B4-201ENST00000271628 HDAC5Q9UQL6 1122 aa19.01■□□□□ 0.63
SF3B4-201ENST00000271628 ALDH1L1O75891 902 aa19■□□□□ 0.63
SF3B4-201ENST00000271628 MAP3K2Q9Y2U5 619 aa18.99■□□□□ 0.63
SF3B4-201ENST00000271628 LRRFIP2Q9Y608 721 aaKnown RBP18.99■□□□□ 0.63
SF3B4-201ENST00000271628 PDIA6Q15084 440 aa18.99■□□□□ 0.63
SF3B4-201ENST00000271628 PROSER3Q2NL68 480 aa18.99■□□□□ 0.63
SF3B4-201ENST00000271628 C5P01031 1676 aa18.98■□□□□ 0.63
SF3B4-201ENST00000271628 PLEKHM2Q8IWE5 1019 aa18.97■□□□□ 0.63
SF3B4-201ENST00000271628 DDX54Q8TDD1 881 aaKnown RBP18.97■□□□□ 0.63
SF3B4-201ENST00000271628 EIF5BO60841 1220 aaKnown RBP18.96■□□□□ 0.63
SF3B4-201ENST00000271628 SHANK3Q9BYB0 1731 aa18.96■□□□□ 0.63
SF3B4-201ENST00000271628 LINS1Q8NG48 757 aa18.96■□□□□ 0.63
SF3B4-201ENST00000271628 SSH3Q8TE77 659 aa18.96■□□□□ 0.63
SF3B4-201ENST00000271628 TBC1D32Q96NH3 1257 aa18.96■□□□□ 0.63
SF3B4-201ENST00000271628 USP16Q9Y5T5 823 aa18.96■□□□□ 0.63
SF3B4-201ENST00000271628 IBTKQ9P2D0 1353 aaPredicted RBP18.95■□□□□ 0.62
SF3B4-201ENST00000271628 PNMA6EA0A0J9YXQ4 647 aa18.95■□□□□ 0.62
SF3B4-201ENST00000271628 TOM1O60784 492 aa18.94■□□□□ 0.62
SF3B4-201ENST00000271628 NBPF7P0C2Y1 421 aaPredicted RBP18.94■□□□□ 0.62
SF3B4-201ENST00000271628 RIC3Q7Z5B4 369 aa18.94■□□□□ 0.62
SF3B4-201ENST00000271628 C9orf78Q9NZ63 289 aaPredicted RBP18.94■□□□□ 0.62
SF3B4-201ENST00000271628 ERBB4Q15303 1308 aa18.94■□□□□ 0.62
SF3B4-201ENST00000271628 AIMP1Q12904 312 aaKnown RBP18.94■□□□□ 0.62
SF3B4-201ENST00000271628 LRRCC1Q9C099 1032 aa18.94■□□□□ 0.62
SF3B4-201ENST00000271628 APBB1O00213 710 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 MYL6BP14649 208 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 NEXNQ0ZGT2 675 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 EXOC6BQ9Y2D4 811 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 LAMB4A4D0S4 1761 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 SLC4A3P48751 1232 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 NFKBIBQ15653 356 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 TTC22Q5TAA0 569 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 C16orf71Q8IYS4 520 aaPredicted RBP18.93■□□□□ 0.62
SF3B4-201ENST00000271628 PHLPP1O60346 1717 aa18.93■□□□□ 0.62
SF3B4-201ENST00000271628 SMARCA5O60264 1052 aaPredicted RBP18.92■□□□□ 0.62
SF3B4-201ENST00000271628 POLA2Q14181 598 aa18.92■□□□□ 0.62
SF3B4-201ENST00000271628 COPS6Q7L5N1 327 aa18.92■□□□□ 0.62
SF3B4-201ENST00000271628 PPP1R42Q7Z4L9 355 aa18.92■□□□□ 0.62
SF3B4-201ENST00000271628 OSBPL3Q9H4L5 887 aa18.92■□□□□ 0.62
SF3B4-201ENST00000271628 COL16A1Q07092 1604 aaPredicted RBP18.91■□□□□ 0.62
SF3B4-201ENST00000271628 RAB11FIP3O75154 756 aa18.91■□□□□ 0.62
SF3B4-201ENST00000271628 XAGE3Q8WTP9 111 aa18.91■□□□□ 0.62
SF3B4-201ENST00000271628 UBR2Q8IWV8 1755 aa18.91■□□□□ 0.62
SF3B4-201ENST00000271628 MFAP1P55081 439 aaKnown RBP18.91■□□□□ 0.62
SF3B4-201ENST00000271628 ANKRD13DQ6ZTN6 518 aa18.91■□□□□ 0.62
SF3B4-201ENST00000271628 C22orf23Q9BZE7 217 aa18.91■□□□□ 0.62
SF3B4-201ENST00000271628 UTYO14607 1347 aa18.9■□□□□ 0.62
SF3B4-201ENST00000271628 SRGAP3O43295 1099 aa18.9■□□□□ 0.62
SF3B4-201ENST00000271628 MTX1Q13505 466 aa18.9■□□□□ 0.62
SF3B4-201ENST00000271628 LRP10Q7Z4F1 713 aa18.9■□□□□ 0.62
SF3B4-201ENST00000271628 PAPPAQ13219 1627 aa18.9■□□□□ 0.62
SF3B4-201ENST00000271628 DISP2A7MBM2 1401 aa18.9■□□□□ 0.62
SF3B4-201ENST00000271628 GSPT1P15170 499 aaKnown RBP18.89■□□□□ 0.62
SF3B4-201ENST00000271628 HSP90AB4PQ58FF6 505 aa18.89■□□□□ 0.62
SF3B4-201ENST00000271628 TMOD3Q9NYL9 352 aa18.89■□□□□ 0.62
SF3B4-201ENST00000271628 GRM8O00222 908 aa18.89■□□□□ 0.61
SF3B4-201ENST00000271628 CDC45O75419 566 aa18.89■□□□□ 0.61
SF3B4-201ENST00000271628 CWF19L2Q2TBE0 894 aaKnown RBP18.89■□□□□ 0.61
SF3B4-201ENST00000271628 METTL22Q9BUU2 404 aaPredicted RBP18.89■□□□□ 0.61
SF3B4-201ENST00000271628 GLI3P10071 1580 aa18.89■□□□□ 0.61
SF3B4-201ENST00000271628 BECN1Q14457 450 aa18.88■□□□□ 0.61
SF3B4-201ENST00000271628 PLCH1Q4KWH8 1693 aa18.88■□□□□ 0.61
SF3B4-201ENST00000271628 EXOC5O00471 708 aa18.88■□□□□ 0.61
SF3B4-201ENST00000271628 SURF6O75683 361 aaKnown RBP18.88■□□□□ 0.61
SF3B4-201ENST00000271628 CDCA7Q9BWT1 371 aaPredicted RBP18.88■□□□□ 0.61
SF3B4-201ENST00000271628 TBC1D9Q6ZT07 1266 aa18.87■□□□□ 0.61
SF3B4-201ENST00000271628 KCPQ6ZWJ8 1503 aa18.87■□□□□ 0.61
SF3B4-201ENST00000271628 TNS2Q63HR2 1409 aa18.87■□□□□ 0.61
SF3B4-201ENST00000271628 PDE1AP54750 535 aa18.86■□□□□ 0.61
SF3B4-201ENST00000271628 OTUD7AQ8TE49 926 aaPredicted RBP18.86■□□□□ 0.61
SF3B4-201ENST00000271628 THRAP3Q9Y2W1 955 aaKnown RBP18.86■□□□□ 0.61
SF3B4-201ENST00000271628 IGKV5-2P06315 115 aa18.86■□□□□ 0.61
SF3B4-201ENST00000271628 NEURL1BA8MQ27 555 aa18.85■□□□□ 0.61
SF3B4-201ENST00000271628 CASC1Q6TDU7 716 aa18.85■□□□□ 0.61
SF3B4-201ENST00000271628 PLBD2Q8NHP8 589 aa18.85■□□□□ 0.61
SF3B4-201ENST00000271628 KIF1BPQ96EK5 621 aa18.85■□□□□ 0.61
SF3B4-201ENST00000271628 TEX13AQ9BXU3 409 aaPredicted RBP18.85■□□□□ 0.61
SF3B4-201ENST00000271628 SALL3Q9BXA9 1300 aa18.85■□□□□ 0.61
SF3B4-201ENST00000271628 TOGARAM1Q9Y4F4 1720 aa18.85■□□□□ 0.61
SF3B4-201ENST00000271628 PTCD1O75127 700 aaKnown RBP18.85■□□□□ 0.61
SF3B4-201ENST00000271628 RBM25P49756 843 aaKnown RBP18.85■□□□□ 0.61
SF3B4-201ENST00000271628 VSIG10Q8N0Z9 540 aa18.85■□□□□ 0.61
SF3B4-201ENST00000271628 MYD88Q99836 296 aa18.85■□□□□ 0.61
SF3B4-201ENST00000271628 MX1P20591 662 aa18.84■□□□□ 0.61
SF3B4-201ENST00000271628 GCKRQ14397 625 aa18.84■□□□□ 0.61
SF3B4-201ENST00000271628 GSE1Q14687 1217 aa18.84■□□□□ 0.61
SF3B4-201ENST00000271628 ADAMTS2O95450 1211 aa18.83■□□□□ 0.61
SF3B4-201ENST00000271628 SDSP20132 328 aa18.83■□□□□ 0.61
SF3B4-201ENST00000271628 PIP4K2BP78356 416 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms