RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 AACSQ86V21 672 aa16.37■□□□□ 0.21
LDLR-201ENST00000252444 BCORL1Q5H9F3 1711 aa16.36■□□□□ 0.21
LDLR-201ENST00000252444 ANKRD13DQ6ZTN6 518 aa16.36■□□□□ 0.21
LDLR-201ENST00000252444 RPGRQ92834 1020 aaKnown RBP16.36■□□□□ 0.21
LDLR-201ENST00000252444 RIMS1Q86UR5 1692 aaKnown RBP16.36■□□□□ 0.21
LDLR-201ENST00000252444 CDKL5O76039 1030 aa16.36■□□□□ 0.21
LDLR-201ENST00000252444 CHRNA2Q15822 529 aa16.36■□□□□ 0.21
LDLR-201ENST00000252444 MRPL50Q8N5N7 158 aaKnown RBP16.36■□□□□ 0.21
LDLR-201ENST00000252444 MARCH6O60337 910 aa16.36■□□□□ 0.21
LDLR-201ENST00000252444 ZGPATQ8N5A5 531 aaKnown RBP16.36■□□□□ 0.21
LDLR-201ENST00000252444 SMC3Q9UQE7 1217 aa16.36■□□□□ 0.21
LDLR-201ENST00000252444 TRMT112Q9UI30 125 aaKnown RBP16.35■□□□□ 0.21
LDLR-201ENST00000252444 PTPRMP28827 1452 aa16.35■□□□□ 0.21
LDLR-201ENST00000252444 LINS1Q8NG48 757 aa16.35■□□□□ 0.21
LDLR-201ENST00000252444 TMOD2Q9NZR1 351 aa16.35■□□□□ 0.21
LDLR-201ENST00000252444 LDHCP07864 332 aa16.35■□□□□ 0.21
LDLR-201ENST00000252444 HMGB1P09429 215 aaKnown RBP16.35■□□□□ 0.21
LDLR-201ENST00000252444 METTL24Q5JXM2 366 aa16.35■□□□□ 0.21
LDLR-201ENST00000252444 FLAD1Q8NFF5 587 aa16.35■□□□□ 0.21
LDLR-201ENST00000252444 FBXW7Q969H0 707 aa16.34■□□□□ 0.21
LDLR-201ENST00000252444 NBPF14Q5TI25 921 aa16.34■□□□□ 0.21
LDLR-201ENST00000252444 USP32Q8NFA0 1604 aa16.34■□□□□ 0.21
LDLR-201ENST00000252444 RFC4P35249 363 aa16.34■□□□□ 0.21
LDLR-201ENST00000252444 MAP3K2Q9Y2U5 619 aa16.34■□□□□ 0.21
LDLR-201ENST00000252444 MX1P20591 662 aa16.33■□□□□ 0.21
LDLR-201ENST00000252444 GSTO1P78417 241 aa16.33■□□□□ 0.21
LDLR-201ENST00000252444 CARD10Q9BWT7 1032 aa16.33■□□□□ 0.21
LDLR-201ENST00000252444 ORAI2Q96SN7 254 aa16.33■□□□□ 0.2
LDLR-201ENST00000252444 DDX21Q9NR30 783 aaKnown RBP eCLIP16.33■□□□□ 0.2
LDLR-201ENST00000252444 TNS3Q68CZ2 1445 aa16.33■□□□□ 0.2
LDLR-201ENST00000252444 TRIM27P14373 513 aa16.33■□□□□ 0.2
LDLR-201ENST00000252444 WASF1Q92558 559 aa16.33■□□□□ 0.2
LDLR-201ENST00000252444 C8orf37Q96NL8 207 aa16.33■□□□□ 0.2
LDLR-201ENST00000252444 DNAJC2Q99543 621 aaKnown RBP16.33■□□□□ 0.2
LDLR-201ENST00000252444 BTG4Q9NY30 223 aa16.33■□□□□ 0.2
LDLR-201ENST00000252444 PTCD1O75127 700 aaKnown RBP16.32■□□□□ 0.2
LDLR-201ENST00000252444 CCDC178Q5BJE1 867 aa16.32■□□□□ 0.2
LDLR-201ENST00000252444 TCEAL9Q9UHQ7 104 aa16.32■□□□□ 0.2
LDLR-201ENST00000252444 DDX46Q7L014 1031 aaKnown RBP16.32■□□□□ 0.2
LDLR-201ENST00000252444 TPM2P07951 284 aa16.32■□□□□ 0.2
LDLR-201ENST00000252444 ZFYP08048 801 aaPredicted RBP16.32■□□□□ 0.2
LDLR-201ENST00000252444 RASSF8Q8NHQ8 419 aa16.32■□□□□ 0.2
LDLR-201ENST00000252444 SLC52A2Q9HAB3 445 aa16.32■□□□□ 0.2
LDLR-201ENST00000252444 CYP46A1Q9Y6A2 500 aa16.32■□□□□ 0.2
LDLR-201ENST00000252444 MAP3K12Q12852 859 aa16.32■□□□□ 0.2
LDLR-201ENST00000252444 DCTN1Q14203 1278 aa16.31■□□□□ 0.2
LDLR-201ENST00000252444 ZNF772Q68DY9 489 aaPredicted RBP16.31■□□□□ 0.2
LDLR-201ENST00000252444 CERS3Q8IU89 383 aa16.31■□□□□ 0.2
LDLR-201ENST00000252444 EVI5LQ96CN4 794 aa16.31■□□□□ 0.2
LDLR-201ENST00000252444 CHL1O00533 1208 aa16.3■□□□□ 0.2
LDLR-201ENST00000252444 ATP6V1AP38606 617 aa16.3■□□□□ 0.2
LDLR-201ENST00000252444 KIAA2012Q0VF49 1180 aa16.3■□□□□ 0.2
LDLR-201ENST00000252444 IGSF1Q8N6C5 1336 aa16.3■□□□□ 0.2
LDLR-201ENST00000252444 LETM1O95202 739 aaPredicted RBP16.3■□□□□ 0.2
LDLR-201ENST00000252444 POLR1AO95602 1720 aaPredicted RBP16.3■□□□□ 0.2
LDLR-201ENST00000252444 THUMPD2Q9BTF0 503 aaKnown RBP16.3■□□□□ 0.2
LDLR-201ENST00000252444 RNF41Q9H4P4 317 aaPredicted RBP16.3■□□□□ 0.2
LDLR-201ENST00000252444 IQGAP1P46940 1657 aa16.3■□□□□ 0.2
LDLR-201ENST00000252444 SLIT1O75093 1534 aa16.3■□□□□ 0.2
LDLR-201ENST00000252444 UTP14AQ9BVJ6 771 aaKnown RBP16.3■□□□□ 0.2
LDLR-201ENST00000252444 ANKRD2Q9GZV1 360 aa16.3■□□□□ 0.2
LDLR-201ENST00000252444 TSHZ2Q9NRE2 1034 aa16.3■□□□□ 0.2
LDLR-201ENST00000252444 CIZ1Q9ULV3 898 aaPredicted RBP16.3■□□□□ 0.2
LDLR-201ENST00000252444 IL15P40933 162 aaPredicted RBP16.29■□□□□ 0.2
LDLR-201ENST00000252444 RTCBQ9Y3I0 505 aaKnown RBP16.29■□□□□ 0.2
LDLR-201ENST00000252444 ARHGEF25Q86VW2 580 aa16.28■□□□□ 0.2
LDLR-201ENST00000252444 PLBD2Q8NHP8 589 aa16.28■□□□□ 0.2
LDLR-201ENST00000252444 U3KPZ7 1027 aaPredicted RBP16.28■□□□□ 0.2
LDLR-201ENST00000252444 PPLO60437 1756 aa16.28■□□□□ 0.2
LDLR-201ENST00000252444 AOX1Q06278 1338 aa16.28■□□□□ 0.2
LDLR-201ENST00000252444 TTC41PQ6P2S7 1318 aa16.28■□□□□ 0.2
LDLR-201ENST00000252444 IMMTQ16891 758 aaKnown RBP16.28■□□□□ 0.2
LDLR-201ENST00000252444 ANKRD44Q8N8A2 993 aa16.28■□□□□ 0.2
LDLR-201ENST00000252444 SETDB2Q96T68 719 aa16.28■□□□□ 0.2
LDLR-201ENST00000252444 PTPRUQ92729 1446 aa16.28■□□□□ 0.2
LDLR-201ENST00000252444 ZNF396Q96N95 335 aaPredicted RBP16.28■□□□□ 0.2
LDLR-201ENST00000252444 TRPC5Q9UL62 973 aaPredicted RBP16.28■□□□□ 0.2
LDLR-201ENST00000252444 GRM8O00222 908 aa16.27■□□□□ 0.2
LDLR-201ENST00000252444 ATP8B2P98198 1209 aa16.27■□□□□ 0.2
LDLR-201ENST00000252444 ECHDC1Q9NTX5 307 aa16.27■□□□□ 0.2
LDLR-201ENST00000252444 WDR17Q8IZU2 1322 aa16.27■□□□□ 0.19
LDLR-201ENST00000252444 VAMP4O75379 141 aa16.27■□□□□ 0.19
LDLR-201ENST00000252444 TRIM22Q8IYM9 498 aa16.27■□□□□ 0.19
LDLR-201ENST00000252444 HMG20BQ9P0W2 317 aa16.27■□□□□ 0.19
LDLR-201ENST00000252444 TMEM131LA2VDJ0 1609 aa16.27■□□□□ 0.19
LDLR-201ENST00000252444 DHX8Q14562 1220 aaKnown RBP16.26■□□□□ 0.19
LDLR-201ENST00000252444 TPTE2Q6XPS3 522 aa16.26■□□□□ 0.19
LDLR-201ENST00000252444 SPATA31A3Q5VYP0 1347 aa16.26■□□□□ 0.19
LDLR-201ENST00000252444 BMP2KLQ5H9B9 411 aa16.26■□□□□ 0.19
LDLR-201ENST00000252444 ZNF790Q6PG37 636 aa16.26■□□□□ 0.19
LDLR-201ENST00000252444 LRRFIP2Q9Y608 721 aaKnown RBP16.26■□□□□ 0.19
LDLR-201ENST00000252444 CPS1P31327 1500 aa16.26■□□□□ 0.19
LDLR-201ENST00000252444 JMYQ8N9B5 988 aa16.26■□□□□ 0.19
LDLR-201ENST00000252444 PLEKHG2Q9H7P9 1386 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 MIS18AQ9NYP9 233 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 PI4KAP2A4QPH2 592 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 PI4KAP1Q8N8J0 262 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 CCDC191Q8NCU4 936 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 ZRANB1Q9UGI0 708 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 C1orf115Q9H7X2 142 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms