RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MAT1AQ00266 395 aaKnown RBP18.22■□□□□ 0.51
CLN3-260ENST00000637578 MEF2AQ02078 507 aaPredicted RBP18.22■□□□□ 0.51
CLN3-260ENST00000637578 PWP1Q13610 501 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 CSHL1Q14406 222 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 SLC6A19Q695T7 634 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 ADGRD1Q6QNK2 874 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 AFAP1L2Q8N4X5 818 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 SPNS1Q9H2V7 528 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 PELI2Q9HAT8 420 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 SNX15Q9NRS6 342 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 PSMC3IPQ9P2W1 217 aaPredicted RBP18.22■□□□□ 0.51
CLN3-260ENST00000637578 PLAAQ9Y263 795 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 LOC102723996A0A087X1L8 192 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 TRIM49D1C9J1S8 452 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 OR1F1O43749 312 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 CYC1P08574 325 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 SLC35E2BP0CK96 405 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 CCDC166P0CW27 439 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 CD1DP15813 335 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 ITGA3P26006 1051 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 CNTFP26441 200 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 SLCO1A2P46721 670 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 SCTRP47872 440 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 EFNA3P52797 238 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 TGFBIQ15582 683 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 CDKL4Q5MAI5 379 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 TMEM205Q6UW68 189 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 IGFL2Q6UWQ7 119 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 RAPH1Q70E73 1250 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 PDSS2Q86YH6 399 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 ZNF740Q8NDX6 193 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 EPS8L3Q8TE67 593 aaKnown RBP18.21■□□□□ 0.51
CLN3-260ENST00000637578 C8orf44Q96CB5 159 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 MOCOSQ96EN8 888 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 YIPF2Q9BWQ6 316 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 LHPPQ9H008 270 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 ZFP69BQ9UJL9 534 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 KCNE2Q9Y6J6 123 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 TTLL8A6PVC2 850 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 MAP2K7O14733 419 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 SNRPAP09012 282 aaKnown RBP18.21■□□□□ 0.51
CLN3-260ENST00000637578 SLC35G6P0C7Q6 338 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 COX6A1P12074 109 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 CRABP2P29373 138 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 AHRP35869 848 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 GGT5P36269 586 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 SERPINB8P50452 374 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 ATP6V0D1P61421 351 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 REEP5Q00765 189 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 NXPE4Q6UWF7 544 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 NDUFAF7Q7L592 441 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 SHISA5Q8N114 240 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 SPATA6LQ8N4H0 392 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 NT5CQ8TCD5 201 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 ISL2Q96A47 359 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 TSNARE1Q96NA8 513 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 EGFL8Q99944 293 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 MFRPQ9BY79 579 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 UNKQ9C0B0 810 aaKnown RBP18.21■□□□□ 0.51
CLN3-260ENST00000637578 ZBTB20Q9HC78 741 aaPredicted RBP18.21■□□□□ 0.51
CLN3-260ENST00000637578 ANKHQ9HCJ1 492 aa18.21■□□□□ 0.51
CLN3-260ENST00000637578 DOCK10Q96BY6 2186 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 IGHV1-45A0A0A0MS14 117 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 SMIM23A6NLE4 172 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 HEXBP07686 556 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 IL1RNP18510 177 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 TYK2P29597 1187 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 MAGEA12P43365 314 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 C18orf21Q32NC0 220 aaPredicted RBP18.2■□□□□ 0.5
CLN3-260ENST00000637578 PLEKHN1Q494U1 663 aaPredicted RBP18.2■□□□□ 0.5
CLN3-260ENST00000637578 FRA10AC1Q70Z53 315 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 PARP9Q8IXQ6 854 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 TBC1D19Q8N5T2 526 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 OR51Q1Q8NH59 317 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 TM9SF4Q92544 642 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 VN1R1Q9GZP7 353 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 PPCSQ9HAB8 311 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 TBK1Q9UHD2 729 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 MKL2Q9ULH7 1088 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 B3GNT3Q9Y2A9 372 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 DYRK1BQ9Y463 629 aa18.2■□□□□ 0.5
CLN3-260ENST00000637578 SGK494L7N484 410 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 NDUFS4O43181 175 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 C2P06681 752 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 CXCR2P25025 360 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 GDF5P43026 501 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 HERC3Q15034 1050 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 OR4D1Q15615 310 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 BEND6Q5SZJ8 279 aaPredicted RBP18.19■□□□□ 0.5
CLN3-260ENST00000637578 LGSNQ5TDP6 509 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 AGAP7PQ5VUJ5 663 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 Q6ZS92 163 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 TDRPQ86YL5 185 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 ANKRD53Q8N9V6 530 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 CPT1CQ8TCG5 803 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 KIAA1191Q96A73 305 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 THOC3Q96J01 351 aaKnown RBP18.19■□□□□ 0.5
CLN3-260ENST00000637578 AGAP4Q96P64 663 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 AIF1LQ9BQI0 150 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 ZNF700Q9H0M5 742 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms