RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DNASE1L2Q92874 299 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 ITPKCQ96DU7 683 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 WDR34Q96EX3 536 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 CCM2Q9BSQ5 444 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 SLIRPQ9GZT3 109 aaKnown RBP12.29□□□□□ -0.44
LINC00540-203ENST00000631321 EPS8L2Q9H6S3 715 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 RASSF1Q9NS23 344 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 FKBP14Q9NWM8 211 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 NDUFAF4Q9P032 175 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 OSGIN1Q9UJX0 560 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 RNF6Q9Y252 685 aa12.29□□□□□ -0.44
LINC00540-203ENST00000631321 MGAT4DA6NG13 374 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 NEDD8-MDP1E9PL57 170 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 TOR1BO14657 336 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ADAMDEC1O15204 470 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 PCDH7O60245 1069 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 LEFTY1O75610 366 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 C8AP07357 584 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 BMP4P12644 408 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 PTX3P26022 381 aaPredicted RBP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 RRM2P31350 389 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 PREPP48147 710 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 NCS1P62166 190 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 TEKQ02763 1124 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 DGCR6Q14129 220 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ZNF284Q2VY69 593 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 DPPA4Q7L190 304 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ADCK1Q86TW2 530 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 OR4A15Q8NGL6 344 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 FOXJ1Q92949 421 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 GLYATL1Q969I3 302 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 SLC38A4Q969I6 547 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 MAL2Q969L2 176 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 LGALS12Q96DT0 336 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 GPATCH2Q9NW75 528 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 PSORS1C1Q9UIG5 152 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 DOLKQ9UPQ8 538 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 PLXNA2O75051 1894 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 A8MVJ9 347 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 TTC34A8MYJ7 566 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 FOXE1O00358 373 aaPredicted RBP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 RFPL2O75678 378 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 LCKP06239 509 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 SRPRAP08240 638 aaKnown RBP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ZNF8P17098 575 aaPredicted RBP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ALDH4A1P30038 563 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 PPM1AP35813 382 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 UGT2B10P36537 528 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 CCR2P41597 374 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ATN1P54259 1190 aaPredicted RBP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 PRMT2P55345 433 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 RPS13P62277 151 aaKnown RBP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 RBBP4Q09028 425 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 TBCEQ15813 527 aaPredicted RBP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ZNF385BQ569K4 471 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 TMEM215Q68D42 235 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 MED27Q6P2C8 311 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 AHSA2Q719I0 299 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 CCDC80Q76M96 950 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 LILRA3Q8N6C8 439 aaPredicted RBP12.28□□□□□ -0.44
LINC00540-203ENST00000631321 KIAA1958Q8N8K9 716 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 IRF7Q92985 503 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 REPS1Q96D71 796 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 CAPNS2Q96L46 248 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 MRGPRX3Q96LB0 322 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 DACH2Q96NX9 599 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ITPAQ9BY32 194 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 REEP4Q9H6H4 257 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 RUBCNLQ9H714 662 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ASAH2Q9NR71 780 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 TMEM184CQ9NVA4 438 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 DKK3Q9UBP4 350 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 DAPK2Q9UIK4 370 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 KCNE2Q9Y6J6 123 aa12.28□□□□□ -0.44
LINC00540-203ENST00000631321 ABHD14A-ACY1A0A1B0GW23 586 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 TNFRSF11BO00300 401 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 CD36P16671 472 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 LSM3P62310 102 aaKnown RBP12.27□□□□□ -0.44
LINC00540-203ENST00000631321 DEFB103AP81534 67 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 IFITM3Q01628 133 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 FCHO2Q0JRZ9 810 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 ELP6Q0PNE2 266 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 SFSWAPQ12872 951 aaKnown RBP12.27□□□□□ -0.44
LINC00540-203ENST00000631321 PDE7AQ13946 482 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 INAQ16352 499 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 ARSIQ5FYB1 569 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 NLRP8Q86W28 1048 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 OR52N2Q8NGI0 321 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 RHOXF1Q8NHV9 184 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 HCAR2Q8TDS4 363 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 NEIL2Q969S2 332 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 TAMM41Q96BW9 452 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 TOX2Q96NM4 488 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 CORO1BQ9BR76 489 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 PAK6Q9NQU5 681 aaPredicted RBP12.27□□□□□ -0.44
LINC00540-203ENST00000631321 THSD1Q9NS62 852 aa12.27□□□□□ -0.44
LINC00540-203ENST00000631321 KRBA1A5PL33 1030 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 CTSLP07711 333 aa12.27□□□□□ -0.45
LINC00540-203ENST00000631321 AQP1P29972 269 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms