RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ZFP69BQ9UJL9 534 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 MID2Q9UJV3 735 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 KCND3Q9UK17 655 aa17.22■□□□□ 0.35
CLN3-239ENST00000628023 GOLGA6L10A6NI86 522 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 ZNF891A8MT65 544 aaPredicted RBP17.21■□□□□ 0.35
CLN3-239ENST00000628023 C21orf140B9A014 251 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 DLX3O60479 287 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 SPAG7O75391 227 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 PROCP04070 461 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 PIM1P11309 404 aaPredicted RBP17.21■□□□□ 0.35
CLN3-239ENST00000628023 EPORP19235 508 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 WT1P19544 449 aaPredicted RBP17.21■□□□□ 0.35
CLN3-239ENST00000628023 CCNG1P51959 295 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 EMP3P54852 163 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 TBCCQ15814 346 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 NKAIN1Q4KMZ8 207 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 TMEM151AQ8N4L1 468 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 UBE2E3Q969T4 207 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 CATSPER2Q96P56 530 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 PITHD1Q9GZP4 211 aaPredicted RBP17.21■□□□□ 0.35
CLN3-239ENST00000628023 DRC3Q9H069 523 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 SLC25A18Q9H1K4 315 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 IPPKQ9H8X2 491 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 MKS1Q9NXB0 559 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 PCTPQ9UKL6 214 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 EMCNQ9ULC0 261 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 CDC14AQ9UNH5 594 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 MAU2Q9Y6X3 613 aa17.21■□□□□ 0.35
CLN3-239ENST00000628023 ANKDD1BA6NHY2 528 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 PLIN3O60664 434 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 RPS17P08708 135 aaKnown RBP17.2■□□□□ 0.34
CLN3-239ENST00000628023 PCNAP12004 261 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 GSTM2P28161 218 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 GCGRP47871 477 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 HERVK_113P63132 956 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 PWP1Q13610 501 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 MLIPQ5VWP3 458 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 ZNF385CQ66K41 422 aaPredicted RBP17.2■□□□□ 0.34
CLN3-239ENST00000628023 GRHL2Q6ISB3 625 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 LCN10Q6JVE6 187 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 MED27Q6P2C8 311 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 PRMT9Q6P2P2 845 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 FAM198BQ6UWH4 519 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 ZYG11AQ6WRX3 759 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 DTWD1Q8N5C7 304 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 ANKRD53Q8N9V6 530 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 TRPV3Q8NET8 790 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 RDH11Q8TC12 318 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 STARD8Q92502 1023 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 COL26A1Q96A83 441 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 TM4SF19Q96DZ7 209 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 CCDC126Q96EE4 140 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 WDR34Q96EX3 536 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 NSUN5Q96P11 429 aaKnown RBP17.2■□□□□ 0.34
CLN3-239ENST00000628023 ERVK-6Q9BXR3 956 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 STMN4Q9H169 189 aaPredicted RBP17.2■□□□□ 0.34
CLN3-239ENST00000628023 C12orf65Q9H3J6 166 aaKnown RBP17.2■□□□□ 0.34
CLN3-239ENST00000628023 NT5DC2Q9H857 520 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 NOL11Q9H8H0 719 aaKnown RBP17.2■□□□□ 0.34
CLN3-239ENST00000628023 SEMA4BQ9NPR2 832 aaPredicted RBP17.2■□□□□ 0.34
CLN3-239ENST00000628023 PADI2Q9Y2J8 665 aa17.2■□□□□ 0.34
CLN3-239ENST00000628023 TLN1Q9Y490 2541 aaKnown RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 SEC16AO15027 2179 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 URADA6NGE7 173 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 PRPF4O43172 522 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLN3-239ENST00000628023 PRAMEF4O60810 478 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 SUPT7LO94864 414 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 MED26O95402 600 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 CD22P20273 847 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 FBLP22087 321 aaKnown RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 CCR10P46092 362 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 OR1D4P47884 311 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 AVPR1BP47901 424 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 CASP8Q14790 479 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 NCF4Q15080 339 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 PRAMEF9Q5VWM5 478 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 LIPJQ5W064 366 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 TMEM214Q6NUQ4 689 aaKnown RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 ZNF517Q6ZMY9 492 aaPredicted RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 RPS27LQ71UM5 84 aaKnown RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 ENDOVQ8N8Q3 282 aaKnown RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 BANPQ8N9N5 519 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 KCT2Q8NC54 265 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 MOCOSQ96EN8 888 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 MVB12AQ96EY5 273 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 MMABQ96EY8 250 aaPredicted RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 SLC45A3Q96JT2 553 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 TMEM237Q96Q45 408 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 YIPF2Q9BWQ6 316 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 GPR87Q9BY21 358 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 ANKHQ9HCJ1 492 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 IL17BQ9UHF5 180 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 MRPS18BQ9Y676 258 aaKnown RBP17.19■□□□□ 0.34
CLN3-239ENST00000628023 MYO18BQ8IUG5 2567 aa17.19■□□□□ 0.34
CLN3-239ENST00000628023 A0A0A6YYC8 382 aaPredicted RBP17.18■□□□□ 0.34
CLN3-239ENST00000628023 PYCARD-AS1I3L0S3 204 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 I3L1I5 382 aaPredicted RBP17.18■□□□□ 0.34
CLN3-239ENST00000628023 UGDHO60701 494 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 WFS1O76024 890 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms