RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SERTAD2Q14140 314 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 CCL15Q16663 113 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 COL28A1Q2UY09 1125 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 HEATR6Q6AI08 1181 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 TRMT10BQ6PF06 316 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 PRSS58Q8IYP2 241 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 ZNF540Q8NDQ6 660 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 CSPG4P5Q96PW8 444 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 RBP7Q96R05 134 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 DPYSL5Q9BPU6 564 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 APOL2Q9BQE5 337 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 ALG2Q9H553 416 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 NDRG3Q9UGV2 375 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 PADI2Q9Y2J8 665 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 SCN10AQ9Y5Y9 1956 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 PTGESO14684 152 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 H2AFYO75367 372 aaKnown RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 CNTN5O94779 1100 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 FBP1P09467 338 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 ZDHHC11BP0C7U3 371 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 PIGAP37287 484 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 KIR2DL3P43628 341 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 LIMK1P53667 647 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 SNRPEP62304 92 aaKnown RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 HYAL2Q12891 473 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 NCBP2-AS2Q69YL0 99 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 PIWIL4Q7Z3Z4 852 aaKnown RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 KDELC2Q7Z4H8 507 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 TP53INP2Q8IXH6 220 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 RBFAQ8N0V3 343 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 LRRC46Q96FV0 321 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 KCTD15Q96SI1 283 aaPredicted RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 RHNO1Q9BSD3 238 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 ANKRD19PQ9H560 264 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 DYRK4Q9NR20 520 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 ABCB8Q9NUT2 735 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 MYEF2Q9P2K5 600 aaKnown RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 HECAQ9UBI9 543 aaPredicted RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 PPIEQ9UNP9 301 aaKnown RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 SLC15A5A6NIM6 579 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 CLDN4O14493 209 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 CHADO15335 359 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 HRO43593 1189 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 PFKLP17858 780 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 PVALBP20472 110 aaPredicted RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 LAP3P28838 519 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 SDC4P31431 198 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 PPP1R8Q12972 351 aaKnown RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 DAG1Q14118 895 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 PUM1Q14671 1186 aaKnown RBP eCLIP10.48□□□□□ -0.73
CLK3-226ENST00000569406 CCDC85BQ15834 202 aaPredicted RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 WSCD2Q2TBF2 565 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 DCAF4L1Q3SXM0 396 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 HECTD3Q5T447 861 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 SLC26A9Q7LBE3 791 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 UNC5BQ8IZJ1 945 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 ABI1Q8IZP0 508 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 KIAA1191Q96A73 305 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 SLC22A18Q96BI1 424 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 CRELD1Q96HD1 420 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 SIGLEC10Q96LC7 697 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 TGIF2Q9GZN2 237 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 ABHD16BQ9H3Z7 469 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 CASS4Q9NQ75 786 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 FAM118AQ9NWS6 357 aa10.48□□□□□ -0.73
CLK3-226ENST00000569406 PURGQ9UJV8 347 aaKnown RBP10.48□□□□□ -0.73
CLK3-226ENST00000569406 PATJQ8NI35 1801 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 TMEM238LA0A1B0GVL6 79 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 SCAMP3O14828 347 aaKnown RBP10.47□□□□□ -0.73
CLK3-226ENST00000569406 SPP1P10451 314 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 KCNE1P15382 129 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 WARSP23381 471 aaKnown RBP10.47□□□□□ -0.73
CLK3-226ENST00000569406 PRKCHP24723 683 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 ATP6V1E1P36543 226 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 TAS2R60P59551 318 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 FASTKQ14296 549 aaKnown RBP10.47□□□□□ -0.73
CLK3-226ENST00000569406 PABPC1L2AQ5JQF8 200 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 ACER2Q5QJU3 275 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 FAM74A1Q5RGS3 127 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 RAET1GQ6H3X3 334 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 CYS1Q717R9 158 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 OTOP2Q7RTS6 562 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 BHLHA9Q7RTU4 235 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 OR6J1Q8NGC5 347 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 PYCR2Q96C36 320 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 PEX11GQ96HA9 241 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 MYRFLQ96LU7 910 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 ZNF670Q9BS34 389 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 PIF1Q9H611 641 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 ABCC13Q9NSE7 274 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 GHRLQ9UBU3 117 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 CD300AQ9UGN4 299 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 MED16Q9Y2X0 877 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 ANKDD1BA6NHY2 528 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 AQP12BA6NM10 295 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 PRMT5O14744 637 aaPredicted RBP10.47□□□□□ -0.73
CLK3-226ENST00000569406 RRP8O43159 456 aaKnown RBP10.47□□□□□ -0.73
CLK3-226ENST00000569406 RASGRP1O95267 797 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 TSPAN8P19075 237 aa10.47□□□□□ -0.73
CLK3-226ENST00000569406 CPN2P22792 545 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms