RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MENTQ9BUN1 341 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 NKX2-4Q9H2Z4 354 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 TMEFF2Q9UIK5 374 aaPredicted RBP19.46■□□□□ 0.71
CLN3-230ENST00000568076 A0A1W2PP55 124 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 E2F6O75461 281 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 NTRK1P04629 796 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 APODP05090 189 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 FURINP09958 794 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 PCSK6P29122 969 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 GDI1P31150 447 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 SLC5A2P31639 672 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 HBA1P69905 142 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 CAMK2GQ13555 558 aaPredicted RBP19.46■□□□□ 0.71
CLN3-230ENST00000568076 PDE7AQ13946 482 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 PRSS53Q2L4Q9 553 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 TMIGD1Q6UXZ0 262 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 ZNF852Q6ZMS4 543 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 CBLL1Q75N03 491 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 HDDC3Q8N4P3 179 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 MPP4Q96JB8 637 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 BARD1Q99728 777 aaKnown RBP19.46■□□□□ 0.71
CLN3-230ENST00000568076 TEX101Q9BY14 249 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 YTHDF1Q9BYJ9 559 aaKnown RBP19.46■□□□□ 0.71
CLN3-230ENST00000568076 MCOLN1Q9GZU1 580 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 GPATCH2Q9NW75 528 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 ZFR2Q9UPR6 939 aaKnown RBP19.46■□□□□ 0.71
CLN3-230ENST00000568076 TRPM6Q9BX84 2022 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 TBX6O95947 436 aaPredicted RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 FUCA1P04066 466 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 KLK1P06870 262 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 ABCB1P08183 1280 aaPredicted RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 MVDP53602 400 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 VLDLRP98155 873 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 KCNAB2Q13303 367 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 VEZF1Q14119 521 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.45■□□□□ 0.7
CLN3-230ENST00000568076 FAM71E1Q6IPT2 247 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 EIF3MQ7L2H7 374 aaKnown RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 CHST15Q7LFX5 561 aaPredicted RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 GOT1L1Q8NHS2 421 aaPredicted RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 MAL2Q969L2 176 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 CIDECQ96AQ7 238 aaPredicted RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 SORBS1Q9BX66 1292 aaKnown RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 NPLQ9BXD5 320 aaPredicted RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 VCX3AQ9NNX9 186 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 MYNNQ9NPC7 610 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 IFT80Q9P2H3 777 aaPredicted RBP19.45■□□□□ 0.7
CLN3-230ENST00000568076 TAC3Q9UHF0 121 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 RPS6KA6Q9UK32 745 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 VPS4AQ9UN37 437 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 TSC22D4Q9Y3Q8 395 aa19.45■□□□□ 0.7
CLN3-230ENST00000568076 B4GAT1O43505 415 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 HS6ST1O60243 411 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 TAS2R50P59544 299 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 AGERQ15109 404 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 IRF4Q15306 451 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 TTC23Q5W5X9 447 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 DUS1LQ6P1R4 473 aaKnown RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 CEP68Q76N32 757 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 HIPK1Q86Z02 1210 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 NAGSQ8N159 534 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 ZNF513Q8N8E2 541 aaPredicted RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 TBC1D20Q96BZ9 403 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 HSH2DQ96JZ2 352 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 ZNF282Q9UDV7 671 aaPredicted RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 RSL24D1Q9UHA3 163 aaKnown RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 hCG_2039718K7EN88 272 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 DIRAS1O95057 198 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 C6orf47O95873 294 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 PAK4O96013 591 aaPredicted RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 TRIM23P36406 574 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 HLCSP50747 726 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 C2orf80Q0P641 193 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 EPS8Q12929 822 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 LAPTM4AQ15012 233 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 ANKRD54Q6NXT1 300 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 SHQ1Q6PI26 577 aaKnown RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 THAP5Q7Z6K1 395 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 DCP2Q8IU60 420 aaKnown RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 EZH1Q92800 747 aaPredicted RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 KLK6Q92876 244 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 UBE2E3Q969T4 207 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 SPATA9Q9BWV2 254 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 CUEDC1Q9NWM3 386 aaPredicted RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 PCDHGA8Q9Y5G5 932 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 DNMT3AQ9Y6K1 912 aaPredicted RBP19.44■□□□□ 0.7
CLN3-230ENST00000568076 DOCK9Q9BZ29 2069 aa19.44■□□□□ 0.7
CLN3-230ENST00000568076 TMEM229AB2RXF0 380 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 KMOO15229 486 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 GCM2O75603 506 aaPredicted RBP19.43■□□□□ 0.7
CLN3-230ENST00000568076 ADH1BP00325 375 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 C5AR1P21730 350 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 PPIBP23284 216 aaKnown RBP19.43■□□□□ 0.7
CLN3-230ENST00000568076 PSMB5P28074 263 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 CDK9P50750 372 aaKnown RBP19.43■□□□□ 0.7
CLN3-230ENST00000568076 CASP9P55211 416 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 SEC13P55735 322 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 HYAL1Q12794 435 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 CYP2A13Q16696 494 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 ITPRIPL2Q3MIP1 535 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms