RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NME2P1O60361 137 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 RDH16O75452 317 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 FGGP02679 453 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 SNRPB2P08579 225 aaKnown RBP15.43■□□□□ 0.06
CLN3-208ENST00000561505 NPPBP16860 134 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 IGFBP2P18065 325 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 NME2P22392 152 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 CCND1P24385 295 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 KRTAP10-9P60411 292 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 CTBP1Q13363 440 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 NSDHLQ15738 373 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 THEMIS2Q5TEJ8 643 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 ZNF468Q5VIY5 522 aaPredicted RBP15.43■□□□□ 0.06
CLN3-208ENST00000561505 ANKRD22Q5VYY1 191 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 CAPN13Q6MZZ7 669 aaPredicted RBP15.43■□□□□ 0.06
CLN3-208ENST00000561505 AGTRAPQ6RW13 159 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 GSTA5Q7RTV2 222 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 PIWIL4Q7Z3Z4 852 aaKnown RBP15.43■□□□□ 0.06
CLN3-208ENST00000561505 GALNTL5Q7Z4T8 443 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 STRA8Q7Z7C7 330 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 ASPGQ86U10 573 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 RPS19BP1Q86WX3 136 aaKnown RBP15.43■□□□□ 0.06
CLN3-208ENST00000561505 GHDCQ8N2G8 530 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 AGGF1Q8N302 714 aaeCLIP15.43■□□□□ 0.06
CLN3-208ENST00000561505 MFSD9Q8NBP5 474 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 SLC13A3Q8WWT9 602 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 AARSD1Q9BTE6 412 aaKnown RBP15.43■□□□□ 0.06
CLN3-208ENST00000561505 KLHL1Q9NR64 748 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 FBXO6Q9NRD1 293 aaPredicted RBP15.43■□□□□ 0.06
CLN3-208ENST00000561505 NAALAD2Q9Y3Q0 740 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 NEU2Q9Y3R4 380 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 MTORP42345 2549 aa15.43■□□□□ 0.06
CLN3-208ENST00000561505 NPIPA5E9PKD4 350 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 SLC16A5O15375 505 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 GALR3O60755 368 aaPredicted RBP15.42■□□□□ 0.06
CLN3-208ENST00000561505 HAUS5O94927 633 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 SYF2O95926 243 aaKnown RBP15.42■□□□□ 0.06
CLN3-208ENST00000561505 STATHP02808 62 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 CDC25BP30305 580 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 SLC1A2P43004 574 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 MEF2AQ02078 507 aaPredicted RBP15.42■□□□□ 0.06
CLN3-208ENST00000561505 SP140Q13342 867 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 PWP1Q13610 501 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 ABRAXAS2Q15018 415 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 HERC3Q15034 1050 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.42■□□□□ 0.06
CLN3-208ENST00000561505 C17orf64Q86WR6 236 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 CPNE9Q8IYJ1 553 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 NFAM1Q8NET5 270 aaPredicted RBP15.42■□□□□ 0.06
CLN3-208ENST00000561505 AGAP11Q8TF27 550 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 TSLPQ969D9 159 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 SIGLEC10Q96LC7 697 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 PARVBQ9HBI1 364 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 XAB2Q9HCS7 855 aaKnown RBP15.42■□□□□ 0.06
CLN3-208ENST00000561505 ANKRD10Q9NXR5 420 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 LRFN1Q9P244 771 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 ADAMTS6Q9UKP5 1117 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 FBXO5Q9UKT4 447 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 NPIPA1Q9UND3 350 aa15.42■□□□□ 0.06
CLN3-208ENST00000561505 IGKV3D-11A0A0A0MRZ8 115 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 FEZF1A0PJY2 475 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 CTAGE9A4FU28 777 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 DNAJB6O75190 326 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 C8GP07360 202 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 FHP07954 510 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 MLF1P58340 268 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 THOC5Q13769 683 aaKnown RBP15.41■□□□□ 0.06
CLN3-208ENST00000561505 KRTAP21-3Q3LHN1 58 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 MFSD4BQ5TF39 518 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 NIPAL1Q6NVV3 410 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 POGLUT1Q8NBL1 392 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 FAM98AQ8NCA5 519 aaKnown RBP15.41■□□□□ 0.06
CLN3-208ENST00000561505 ZNF669Q96BR6 464 aaPredicted RBP15.41■□□□□ 0.06
CLN3-208ENST00000561505 TBC1D20Q96BZ9 403 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 SERPINB12Q96P63 405 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 CCDC68Q9H2F9 335 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 CDCP1Q9H5V8 836 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 MCCC2Q9HCC0 563 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 PLSCR2Q9NRY7 297 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 SAMD15Q9P1V8 674 aa15.41■□□□□ 0.06
CLN3-208ENST00000561505 SCN3AQ9NY46 2000 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 FAM227AF5H4B4 570 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 NDC80O14777 642 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 SLC25A12O75746 678 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 F7P08709 466 aaPredicted RBP15.4■□□□□ 0.06
CLN3-208ENST00000561505 SLC35G6P0C7Q6 338 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 SMIM10L1P0DMW3 83 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 ALOX12P18054 663 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 TPP2P29144 1249 aaPredicted RBP15.4■□□□□ 0.06
CLN3-208ENST00000561505 OR4D2P58180 307 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 TAS2R50P59544 299 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 ACTN3Q08043 901 aaPredicted RBP15.4■□□□□ 0.06
CLN3-208ENST00000561505 QSOX2Q6ZRP7 698 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 NCCRP1Q6ZVX7 275 aaPredicted RBP15.4■□□□□ 0.06
CLN3-208ENST00000561505 ZNF740Q8NDX6 193 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 OR5T3Q8NGG3 340 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 OR56A3Q8NH54 315 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 C16orf52Q8NHV5 167 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 ZCCHC10Q8TBK6 192 aa15.4■□□□□ 0.06
CLN3-208ENST00000561505 NT5CQ8TCD5 201 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms