RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 DMRT3Q9NQL9 472 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 DHCR7Q9UBM7 475 aaKnown RBP12.21□□□□□ -0.45
SHMT2-227ENST00000557269 ZDHHC2Q9UIJ5 367 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 STK38LQ9Y2H1 464 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 TSC22D4Q9Y3Q8 395 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 PCDHGA11Q9Y5H2 935 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 PTGDR2Q9Y5Y4 395 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 AK5Q9Y6K8 562 aa12.21□□□□□ -0.45
SHMT2-227ENST00000557269 SPTBP11277 2137 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 LRIT2A6NDA9 550 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ANKDD1BA6NHY2 528 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 NVLO15381 856 aaKnown RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 DNAJB6O75190 326 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 SNNO75324 88 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 CLEC3AO75596 197 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 DXOO77932 396 aaKnown RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 STK17BO94768 372 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 HSPA4LO95757 839 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ENO1P06733 434 aaKnown RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 SERPINA6P08185 405 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 RBMS1P29558 406 aaKnown RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 SERPINB5P36952 375 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 RPS13P62277 151 aaKnown RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 SHC2P98077 582 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 GALNT1Q10472 559 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 GPS2Q13227 327 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 GRM7Q14831 915 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ABRAXAS2Q15018 415 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 TOR1AIP1Q5JTV8 583 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 C1orf189Q5VU69 101 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 KANK2Q63ZY3 851 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 TTC19Q6DKK2 380 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 LCN10Q6JVE6 187 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 TIPARPQ7Z3E1 657 aaKnown RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 UBE3DQ7Z6J8 389 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ZFAND4Q86XD8 727 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 METTL27Q8N6F8 245 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF781Q8N8C0 355 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 CAMKVQ8NCB2 501 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 TRPV3Q8NET8 790 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ZCCHC10Q8TBK6 192 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 MS4A8Q9BY19 250 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 SLC29A3Q9BZD2 475 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ASPSCR1Q9BZE9 553 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ULBP3Q9BZM4 244 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 OR51B5Q9H339 312 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 TUBB1Q9H4B7 451 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 ACTR5Q9H9F9 607 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-227ENST00000557269 CUTCQ9NTM9 273 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 FIS1Q9Y3D6 152 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 TRAF6Q9Y4K3 522 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 PCDHB3Q9Y5E6 796 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 PCDHGA7Q9Y5G6 932 aa12.2□□□□□ -0.46
SHMT2-227ENST00000557269 AKAP13Q12802 2813 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 A0A0G2JN53 185 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 FOXE1O00358 373 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 SAP18O00422 153 aaKnown RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 AZIN1O14977 448 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 FOXS1O43638 330 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 DLGAP3O95886 979 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 FGF4P08620 206 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 SLC35G6P0C7Q6 338 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF888P0CJ79 500 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 ATXN8OSP0DMR3 200 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 SMIM10L1P0DMW3 83 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 GSTM2P28161 218 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 HMOX2P30519 316 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 RORAP35398 523 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 PIK3CBP42338 1070 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 RAB8AP61006 207 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 ADPRMQ3LIE5 342 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 SH2D4BQ5SQS7 431 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 TMEM164Q5U3C3 297 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF385CQ66K41 422 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 CYB5D1Q6P9G0 228 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 TTLL10Q6ZVT0 673 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 PDSS2Q86YH6 399 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 TTC29Q8NA56 475 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 GALNT6Q8NCL4 622 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 TTLQ8NG68 377 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 UTP15Q8TED0 518 aaKnown RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 CKAP2Q8WWK9 683 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 SELENOMQ8WWX9 145 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 REPS1Q96D71 796 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 NXPE2Q96DL1 559 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 MS4A6EQ96DS6 147 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 CLIP3Q96DZ5 547 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 SMIM10Q96HG1 83 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 SEC16BQ96JE7 1060 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 MAGEB10Q96LZ2 347 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 TEFMQ96QE5 360 aaKnown RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 ZPBPQ9BS86 351 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 NDC1Q9BTX1 674 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 TMEM121BQ9BXQ6 578 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 B3GNT4Q9C0J1 378 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 ELOVL6Q9H5J4 265 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 EML4Q9HC35 981 aaKnown RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 PNPOQ9NVS9 261 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 SNX6Q9UNH7 406 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms