RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 ZNF592Q92610 1267 aa12.87□□□□□ -0.35
PRPF39-204ENST00000553605 PEX11GQ96HA9 241 aa12.87□□□□□ -0.35
PRPF39-204ENST00000553605 RBCK1Q9BYM8 510 aa12.87□□□□□ -0.35
PRPF39-204ENST00000553605 ANKHQ9HCJ1 492 aa12.87□□□□□ -0.35
PRPF39-204ENST00000553605 LANCL2Q9NS86 450 aa12.87□□□□□ -0.35
PRPF39-204ENST00000553605 PIH1D1Q9NWS0 290 aaKnown RBP12.87□□□□□ -0.35
PRPF39-204ENST00000553605 TAC3Q9UHF0 121 aa12.87□□□□□ -0.35
PRPF39-204ENST00000553605 FOXD3Q9UJU5 478 aaPredicted RBP12.87□□□□□ -0.35
PRPF39-204ENST00000553605 LIPGQ9Y5X9 500 aa12.87□□□□□ -0.35
PRPF39-204ENST00000553605 HEATR5BQ9P2D3 2071 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 A0A1B0GTH6 734 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 TRIM64A6NGJ6 449 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 TRIM64BA6NI03 449 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 AQP7O14520 342 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 SMPD2O60906 423 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 RDH16O75452 317 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 GOSR1O95249 250 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 GOT2P00505 430 aaKnown RBP12.86□□□□□ -0.35
PRPF39-204ENST00000553605 ERGP11308 486 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 BMP5P22003 454 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 PPARGP37231 505 aaPredicted RBP12.86□□□□□ -0.35
PRPF39-204ENST00000553605 ZBED6P86452 979 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 WLSQ5T9L3 541 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 KCTD11Q693B1 232 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 TMEM214Q6NUQ4 689 aaKnown RBP12.86□□□□□ -0.35
PRPF39-204ENST00000553605 TRILQ7L0X0 811 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 KLHDC8BQ8IXV7 354 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 OR9A1PQ8NGU1 263 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 LINC01560Q8TB33 94 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 TMEM158Q8WZ71 300 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 MRFAP1L1Q96HT8 127 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 OR1F2PQ96R84 312 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 MACROD1Q9BQ69 325 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 YIPF4Q9BSR8 244 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 CNPPD1Q9BV87 410 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 TTTY12Q9BZ98 90 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 KCMF1Q9P0J7 381 aa12.86□□□□□ -0.35
PRPF39-204ENST00000553605 R3HDM2Q9Y2K5 976 aaKnown RBP12.86□□□□□ -0.35
PRPF39-204ENST00000553605 SCN3AQ9NY46 2000 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 APOC4-APOC2K7ER74 178 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 DVL2O14641 736 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 KPNA5O15131 536 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 SPOPO43791 374 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 KIF5CO60282 957 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 ITGA10O75578 1167 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 APOC2P02655 101 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 HRGP04196 525 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 GABRA1P14867 456 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 BMP7P18075 431 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 COMTP21964 271 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 ABATP80404 500 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 SEMA3AQ14563 771 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 NR1I3Q14994 352 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 POU4F3Q15319 338 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 ANKRD20A4Q4UJ75 823 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 CCDC38Q502W7 563 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 NDUFAF5Q5TEU4 345 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 PTRHD1Q6GMV3 140 aaKnown RBP12.85□□□□□ -0.35
PRPF39-204ENST00000553605 AFTPHQ6ULP2 937 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 KIAA0408Q6ZU52 694 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 OTOAQ7RTW8 1153 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 VN1R4Q7Z5H5 301 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 YTHDF3Q7Z739 585 aaKnown RBP12.85□□□□□ -0.35
PRPF39-204ENST00000553605 KIF18BQ86Y91 864 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 PDSS2Q86YH6 399 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 PSD4Q8NDX1 1056 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 OR2M7Q8NG81 312 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 OR13J1Q8NGT2 312 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 OR4L1Q8NH43 312 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 SARAFQ96BY9 339 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 PANX3Q96QZ0 392 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 SECISBP2Q96T21 854 aaKnown RBP12.85□□□□□ -0.35
PRPF39-204ENST00000553605 PIP5K1AQ99755 562 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 EBNA1BP2Q99848 306 aaKnown RBP12.85□□□□□ -0.35
PRPF39-204ENST00000553605 HEMGNQ9BXL5 484 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 MTRF1LQ9UGC7 380 aaKnown RBP12.85□□□□□ -0.35
PRPF39-204ENST00000553605 ERVK-11Q9UQG0 969 aa12.85□□□□□ -0.35
PRPF39-204ENST00000553605 A0A1W2PPR1 153 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 SAGE2PA6NJ88 616 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 H7BY64 318 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 CES2O00748 559 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 SUSD5O60279 629 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 MAGEA5P43359 124 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 MAN2A2P49641 1150 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 MEF2AQ02078 507 aaPredicted RBP12.84□□□□□ -0.35
PRPF39-204ENST00000553605 ARHGAP19Q14CB8 494 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 SLC18A3Q16572 532 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 FASTKD1Q53R41 847 aaKnown RBP12.84□□□□□ -0.35
PRPF39-204ENST00000553605 PODNL1Q6PEZ8 512 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 BBS12Q6ZW61 710 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 CDKL3Q8IVW4 592 aaPredicted RBP12.84□□□□□ -0.35
PRPF39-204ENST00000553605 RCOR2Q8IZ40 523 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 FAM109AQ8N4B1 249 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 TMEM251Q8N6I4 163 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 NFAM1Q8NET5 270 aaPredicted RBP12.84□□□□□ -0.35
PRPF39-204ENST00000553605 ZCCHC10Q8TBK6 192 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 CCDC138Q96M89 665 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 PRAP1Q96NZ9 151 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 ANP32EQ9BTT0 268 aa12.84□□□□□ -0.35
PRPF39-204ENST00000553605 LDAHQ9H6V9 325 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms