RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SOCS5O75159 536 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 ABCB1P08183 1280 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 CYP2A7P20853 494 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 PTPN5P54829 565 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 DMC1Q14565 340 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 MED22Q15528 200 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 LIPJQ5W064 366 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 RETSATQ6NUM9 610 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 PRSS55Q6UWB4 352 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 NANOGNBQ7Z5D8 188 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 NAGSQ8N159 534 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 FLCNQ8NFG4 579 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 OR4C15Q8NGM1 316 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 MTERF1Q99551 399 aaKnown RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 MGLLQ99685 303 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 P2RY13Q9BPV8 354 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 SNX8Q9Y5X2 465 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 GCM2O75603 506 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 CKBP12277 381 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 HLA-EP13747 358 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 TIE1P35590 1138 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 MAPK8P45983 427 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 HTR3AP46098 478 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 TUFMP49411 452 aaKnown RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 NKX3-2P78367 333 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 B4GALNT1Q00973 533 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 DDX39BQ13838 428 aaKnown RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 IFI44LQ53G44 452 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 ANXA8L1Q5VT79 327 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 NPAS3Q8IXF0 933 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 ST13P5Q8NFI4 369 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 OR6F1Q8NGZ6 308 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 CHTF18Q8WVB6 975 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 ELMO1Q92556 727 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 ALG14Q96F25 216 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 ASIC4Q96FT7 647 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 SDHCQ99643 169 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 KCNS3Q9BQ31 491 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 CDCA4Q9BXL8 241 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 ROGDIQ9GZN7 287 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 CCDC177Q9NQR7 707 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-202ENST00000553340 C14orf119Q9NWQ9 140 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 TMEM161AQ9NX61 479 aa16.9■□□□□ 0.3
SYNE3-202ENST00000553340 EFCAB10A6NFE3 127 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 GABRR3A8MPY1 467 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 CTDSP2O14595 271 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 SEPT4O43236 478 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 SSX4O60224 188 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 OPN1SWP03999 348 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 TNFRSF1BP20333 461 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 SLC11A1P49279 550 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 AP1S2P56377 157 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 ELAVL2Q12926 359 aaKnown RBP16.89■□□□□ 0.29
SYNE3-202ENST00000553340 SP140Q13342 867 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 TSTQ16762 297 aaKnown RBP16.89■□□□□ 0.29
SYNE3-202ENST00000553340 EXOC3L2Q2M3D2 409 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 TMCO6Q96DC7 493 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 BBS2Q9BXC9 721 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 NDEL1Q9GZM8 345 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 ERVK13-1Q9NX77 482 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 N6AMT1Q9Y5N5 214 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 NPIPB15A6NHN6 443 aaPredicted RBP16.89■□□□□ 0.29
SYNE3-202ENST00000553340 A8MVJ9 347 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 NT5C1B-RDH14C9J2C7 533 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 CCRL2O00421 344 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 PCDH7O60245 1069 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 UGDHO60701 494 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 MPC1LP0DKB6 136 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 ASMTP46597 345 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 SEMG2Q02383 582 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 GAB1Q13480 694 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 MBTPS1Q14703 1052 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 SF1Q15637 639 aaKnown RBP16.89■□□□□ 0.29
SYNE3-202ENST00000553340 LRRC26Q2I0M4 334 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 ATP13A5Q4VNC0 1218 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 C19orf48Q6RUI8 117 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 ANGPTL8Q6UXH0 198 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 VRK3Q8IV63 474 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 UBQLNLQ8IYU4 475 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 OR8H2Q8N162 312 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 HJURPQ8NCD3 748 aaPredicted RBP16.89■□□□□ 0.29
SYNE3-202ENST00000553340 FBXO22Q8NEZ5 403 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 LILRB4Q8NHJ6 448 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 WDR20Q8TBZ3 569 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 OR5M11Q96RB7 305 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 C2orf49Q9BVC5 232 aaPredicted RBP16.89■□□□□ 0.29
SYNE3-202ENST00000553340 SPATA6Q9NWH7 488 aaPredicted RBP16.89■□□□□ 0.29
SYNE3-202ENST00000553340 TAS2R16Q9NYV7 291 aa16.89■□□□□ 0.29
SYNE3-202ENST00000553340 A0A075B6Q4 140 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 SLC16A5O15375 505 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 CRATP43155 626 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 OR1E2P47887 323 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 PFN3P60673 137 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 CDC42P60953 191 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 STARD3Q14849 445 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 BCL7AQ4VC05 210 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 XKR6Q5GH73 641 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 PRR23CQ6ZRP0 262 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 WFDC5Q8TCV5 224 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms