RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 PWP1Q13610 501 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 SH2D4BQ5SQS7 431 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 ATG16L1Q676U5 607 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 TTC29Q8NA56 475 aaPredicted RBP20.19■□□□□ 0.82
VPS29-206ENST00000549578 ZCCHC10Q8TBK6 192 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 RAB3IL1Q8TBN0 382 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 NT5CQ8TCD5 201 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 NXPE2Q96DL1 559 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 SEC16BQ96JE7 1060 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 TEFMQ96QE5 360 aaKnown RBP20.19■□□□□ 0.82
VPS29-206ENST00000549578 HBEGFQ99075 208 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 SORT1Q99523 831 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 ZPBPQ9BS86 351 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 NLNQ9BYT8 704 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 ULBP3Q9BZM4 244 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 ACTR5Q9H9F9 607 aaPredicted RBP20.19■□□□□ 0.82
VPS29-206ENST00000549578 ASCL3Q9NQ33 180 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 DMRT3Q9NQL9 472 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 ENAMQ9NRM1 1142 aa20.19■□□□□ 0.82
VPS29-206ENST00000549578 MRPS2Q9Y399 296 aaKnown RBP20.19■□□□□ 0.82
VPS29-206ENST00000549578 MAGEB17A8MXT2 336 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 MANBAO00462 879 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 TXNDC9O14530 226 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 AZIN1O14977 448 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 BRINP1O60477 761 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 KIAA0754O94854 1291 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 SERPINA6P08185 405 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 HNRNPH1P31943 449 aaKnown RBP20.18■□□□□ 0.82
VPS29-206ENST00000549578 RGS1Q08116 209 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 ARHGEF39Q8N4T4 335 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 DTWD1Q8N5C7 304 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 SLC38A9Q8NBW4 561 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 FAM76AQ8TAV0 307 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 SELENOMQ8WWX9 145 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 C10orf90Q96M02 699 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 NDC1Q9BTX1 674 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 SLC7A5P2Q9GIP4 190 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 SLC6A16Q9GZN6 736 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 AICDAQ9GZX7 198 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 KLHL31Q9H511 634 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 CUTCQ9NTM9 273 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 DHCR7Q9UBM7 475 aaKnown RBP20.18■□□□□ 0.82
VPS29-206ENST00000549578 ZDHHC2Q9UIJ5 367 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 TSC22D4Q9Y3Q8 395 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 PCDHB3Q9Y5E6 796 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 NCOR2Q9Y618 2525 aa20.18■□□□□ 0.82
VPS29-206ENST00000549578 MED19A0JLT2 244 aaPredicted RBP20.17■□□□□ 0.82
VPS29-206ENST00000549578 CDRT15L2A8MXV6 281 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 NVLO15381 856 aaKnown RBP20.17■□□□□ 0.82
VPS29-206ENST00000549578 SNNO75324 88 aaPredicted RBP20.17■□□□□ 0.82
VPS29-206ENST00000549578 TGFB1P01137 390 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 PDYNP01213 254 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 KRT6AP02538 564 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 KRT6BP04259 564 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 UROSP10746 265 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 SERPINB1P30740 379 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 SLC5A2P31639 672 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 PIK3CBP42338 1070 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 GCGRP47871 477 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 KRT6CP48668 564 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 RPS13P62277 151 aaKnown RBP20.17■□□□□ 0.82
VPS29-206ENST00000549578 TOR1AIP1Q5JTV8 583 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 TMEM214Q6NUQ4 689 aaKnown RBP20.17■□□□□ 0.82
VPS29-206ENST00000549578 IGF2-ASQ6U949 168 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 SCIMPQ6UWF3 145 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 ZNF781Q8N8C0 355 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 LRRC8CQ8TDW0 803 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 CKAP2Q8WWK9 683 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 MS4A8Q9BY19 250 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 ADGRE2Q9UHX3 823 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 TRAF6Q9Y4K3 522 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 LRIT2A6NDA9 550 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 KLF11O14901 512 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 DXOO77932 396 aaKnown RBP20.17■□□□□ 0.82
VPS29-206ENST00000549578 STK17BO94768 372 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 PHEXP78562 749 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 ABRAXAS2Q15018 415 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 KANK2Q63ZY3 851 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 TTLL10Q6ZVT0 673 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 CLIP3Q96DZ5 547 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 F2RL3Q96RI0 385 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 OR51B5Q9H339 312 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 THAP1Q9NVV9 213 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 SRPK3Q9UPE1 567 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 RAP2CQ9Y3L5 183 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 PCDHGA7Q9Y5G6 932 aa20.17■□□□□ 0.82
VPS29-206ENST00000549578 CEP295Q9C0D2 2601 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 TEX51A0A1B0GUA7 166 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 C4orf51C9J302 202 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 CPNE3O75131 537 aaKnown RBP20.16■□□□□ 0.82
VPS29-206ENST00000549578 ULK1O75385 1050 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 ETHE1O95571 254 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 FGF4P08620 206 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 ZNF888P0CJ79 500 aaPredicted RBP20.16■□□□□ 0.82
VPS29-206ENST00000549578 ATXN8OSP0DMR3 200 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 ALAS2P22557 587 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 ARSFP54793 590 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 MUM1Q2TAK8 710 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 FAM214AQ32MH5 1076 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 MANEAQ5SRI9 462 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms