RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 CD300LGQ6UXG3 332 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 TRABD2AQ86V40 505 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 C11orf65Q8NCR3 313 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 MYLIPQ8WY64 445 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 CDKN2AIPNLQ96HQ2 116 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SLC35G5Q96KT7 338 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 ZNF641Q96N77 438 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SLC46A2Q9BY10 475 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 TOR4AQ9NXH8 423 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SLC17A7Q9P2U7 560 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 TCRBV5S1A1TA0A578 114 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SAP18O00422 153 aaKnown RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 TNFRSF10BO14763 440 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 MTRF1O75570 445 aaKnown RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 OR5F1O95221 314 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 ZNF182P17025 639 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 GNALP38405 381 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 NCBP2P52298 156 aaKnown RBP eCLIP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 CAPZA1P52907 286 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 PLP2Q04941 152 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 RBPJQ06330 500 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 BST1Q10588 318 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 LMAN2Q12907 356 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 PAFAH1B3Q15102 231 aaKnown RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 CYP27C1Q4G0S4 372 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SLC30A6Q6NXT4 461 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 UGT2A3Q6UWM9 527 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 RAB43Q86YS6 212 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 CLDN19Q8N6F1 224 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 ZSCAN4Q8NAM6 433 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 LILRB4Q8NHJ6 448 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 FAM110BQ8TC76 370 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 DCAKDQ8WVC6 231 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 EEF1AKMT1Q8WVE0 214 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 EDAQ92838 391 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 NAT6Q93015 286 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 RNF31Q96EP0 1072 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 FCRL5Q96RD9 977 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 C9orf16Q9BUW7 83 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 TP63Q9H3D4 680 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 POLE4Q9NR33 117 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 FNIP2Q9P278 1114 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SH3BGRL2Q9UJC5 107 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 ZSWIM8A7E2V4 1837 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 H7C0S8 307 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 PCDHGA12O60330 932 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 RSL1D1O76021 490 aaKnown RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 NR2F6P10588 404 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 CBX5P45973 191 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SLC9A3P48764 834 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 VSX2P58304 361 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 GNG2P59768 71 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 LSM3P62310 102 aaKnown RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 GK3PQ14409 553 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SIX1Q15475 284 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SLC9B1Q4ZJI4 515 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 GCNT6Q5T4J0 391 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 GPRC6AQ5T6X5 926 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 TRIQKQ629K1 86 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 TMEM25Q86YD3 366 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 CCDC28AQ8IWP9 274 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 GJD3Q8N144 294 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 MAFAQ8NHW3 353 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-218ENST00000545889 TMEM109Q9BVC6 243 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 EBPLQ9BY08 206 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SLC17A9Q9BYT1 436 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 HEBP1Q9NRV9 189 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 MOCS1Q9NZB8 636 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 SCML1Q9UN30 329 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 ERGIC3Q9Y282 383 aa8.33□□□□□ -1.08
CLIP1-218ENST00000545889 IGLON5A6NGN9 336 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 RIIAD1A6NNX1 92 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 MID1O15344 667 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 GRIA3P42263 894 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 OMPP47874 163 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 RPL26P61254 145 aaKnown RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 CLCQ05315 142 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 RASGEF1BQ0VAM2 473 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 GALNT2Q10471 571 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 TMEM115Q12893 351 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 LCP2Q13094 533 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 ENPP2Q13822 863 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 ZNF267Q14586 743 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 MAPK14Q16539 360 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 TIMM50Q3ZCQ8 353 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 TRMT10BQ6PF06 316 aaKnown RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 TMPPEQ6ZT21 453 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 KCTD8Q6ZWB6 473 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 GAREM2Q75VX8 874 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 ARCQ7LC44 396 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 OR8H2Q8N162 312 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 METTL25Q8N6Q8 603 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 HORMAD2Q8N7B1 307 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 BPIFB6Q8NFQ5 453 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 OR2T12Q8NG77 320 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 FBXO27Q8NI29 283 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 THAP3Q8WTV1 239 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-218ENST00000545889 KCNJ9Q92806 393 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 SCAMP4Q969E2 229 aa8.32□□□□□ -1.08
CLIP1-218ENST00000545889 CLK4Q9HAZ1 481 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms