RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 RPL7AP62424 266 aaKnown RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 HSPA14Q0VDF9 509 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SLC13A2Q13183 592 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ARL6IP1Q15041 203 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CA9Q16790 459 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 C9orf64Q5T6V5 341 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ABHD17BQ5VST6 288 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 KANK2Q63ZY3 851 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RHBDF2Q6PJF5 856 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 UNQ6126/PRO20091Q6UXV3 157 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 STX12Q86Y82 276 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RBM12BQ8IXT5 1001 aaKnown RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 DEFB119Q8N690 84 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CHFRQ96EP1 664 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 C1GALT1C1Q96EU7 318 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 NARS2Q96I59 477 aaKnown RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 C14orf166Q9Y224 244 aaKnown RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 B3GNT3Q9Y2A9 372 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CDH10Q9Y6N8 788 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PPM1BO75688 479 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SRFP11831 508 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CST5P28325 142 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 AGTR1P30556 359 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RHDQ02161 417 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ZIK1Q3SY52 487 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PIM3Q86V86 326 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ZC3HC1Q86WB0 502 aaKnown RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 UXS1Q8NBZ7 420 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SETD6Q8TBK2 473 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 FER1L6-AS2Q96M78 137 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CEP41Q9BYV8 373 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 EBF3Q9H4W6 596 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RMI1Q9H9A7 625 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CXXC1Q9P0U4 656 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 KLHL42Q9P2K6 505 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 TEX264Q9Y6I9 313 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 A0A0U1RQF3 1178 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 DAPL1A0PJW8 107 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 LCHNA4D1U4 455 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 E7ESA3 106 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 TNFRSF10BO14763 440 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 FANCGO15287 622 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 VNN1O95497 513 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 OAS1P00973 400 aaKnown RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 H1F0P07305 194 aaKnown RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 HLA-EP13747 358 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 HNRNPLP14866 589 aaKnown RBP eCLIP7.57□□□□□ -1.22e-6■■■■□ 22.1
VPS13D-211ENST00000543710 HK1P19367 917 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 MAT2AP31153 395 aaKnown RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SOX11P35716 441 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 CTBP1Q13363 440 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SERINC3Q13530 473 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 TIGD2Q4W5G0 525 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 TMPRSS11BQ86T26 416 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 TAC4Q86UU9 113 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 OR4K2Q8NGD2 314 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 GTPBP3Q969Y2 492 aaKnown RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 CARD8Q9Y2G2 431 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 TRAPPC13A5PLN9 417 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 DCLK1O15075 740 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 PLOD3O60568 738 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 RGS9O75916 674 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SLITRK5O94991 958 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 PCCBP05166 539 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 NMBRP28336 390 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 CCKBRP32239 447 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 MRPS10P82664 201 aaKnown RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF252P-AS1Q0IIN9 211 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF792Q3KQV3 632 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 MINDY4Q4G0A6 757 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 HSD17B12Q53GQ0 312 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 RABL3Q5HYI8 236 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 GDPGP1Q6ZNW5 385 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SLC7A6OSQ96CW6 309 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF317Q96PQ6 595 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 VPS29Q9UBQ0 182 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 RREB1Q92766 1687 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SOWAHBA6NEL2 793 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 LRRN3E7EW58 273 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 BCAT2O15382 392 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 PROM1O43490 865 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 APOL3O95236 402 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 SYNGR4O95473 234 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 PDYNP01213 254 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 GSTT2P0CG29 244 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF182P17025 639 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ITGB5P18084 799 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 RPS3P23396 243 aaKnown RBP eCLIP7.57□□□□□ -1.24e-6■■■■■ 40.4
VPS13D-211ENST00000543710 AP2S1P53680 142 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 KEAP1Q14145 624 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 HSDL1Q3SXM5 330 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 PNCKQ6P2M8 343 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 RNF44Q7L0R7 432 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 DET1Q7L5Y6 550 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ZFAND4Q86XD8 727 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ZSWIM9Q86XI8 627 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 MINDY1Q8N5J2 469 aa7.57□□□□□ -1.2
VPS13D-211ENST00000543710 ARL14EPQ8N8R7 260 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 TRUB1Q8WWH5 349 aaKnown RBP7.57□□□□□ -1.2
VPS13D-211ENST00000543710 OR5P2Q8WZ92 322 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms