RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 RNASET2O00584 256 aaKnown RBP13.23□□□□□ -0.29
VPS33A-208ENST00000543633 RGS13O14921 159 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 CPSF4O95639 269 aaKnown RBP13.23□□□□□ -0.29
VPS33A-208ENST00000543633 EFEMP2O95967 443 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 DBTP11182 482 aaKnown RBP13.23□□□□□ -0.29
VPS33A-208ENST00000543633 TGFBR1P36897 503 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 CASP3P42574 277 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 PFN3P60673 137 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 FCHO2Q0JRZ9 810 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 CPTPQ5TA50 214 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 CCDC80Q76M96 950 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 GALNT10Q86SR1 603 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 NPAS4Q8IUM7 802 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 CLECL1Q8IZS7 167 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 STX19Q8N4C7 294 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 TTC16Q8NEE8 873 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 GOT1L1Q8NHS2 421 aaPredicted RBP13.23□□□□□ -0.29
VPS33A-208ENST00000543633 ATL1Q8WXF7 558 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 UBE2FQ969M7 185 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 KCNC2Q96PR1 638 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 FEVQ99581 238 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 CDCA4Q9BXL8 241 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 ABCB8Q9NUT2 735 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 NDUFAF4Q9P032 175 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 SLC22A14Q9Y267 594 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 TRAPPC4Q9Y296 219 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 OBSL1O75147 1896 aa13.23□□□□□ -0.29
VPS33A-208ENST00000543633 A0A075B6Q4 140 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 A0A1W2PQ45 241 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 A0A1W2PQ67 120 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 A0A1W2PQY0 241 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 C2orf78A6NCI8 922 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 ADAM12O43184 909 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 AP2A2O94973 939 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 APOA1P02647 267 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 GSTM1P09488 218 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 LAMP1P11279 417 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 PIK3CBP42338 1070 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 RGS6P49758 472 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 SMAD3P84022 425 aaKnown RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 VEPH1Q14D04 833 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 MICAQ29983 383 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 SPIN4Q56A73 249 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 TPGS2Q68CL5 300 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 TSEN54Q7Z6J9 526 aaKnown RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 CCDC103Q8IW40 242 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 OR2AP1Q8NGE2 309 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 OR6K2Q8NGY2 324 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 SETD6Q8TBK2 473 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 WFDC5Q8TCV5 224 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 HTRA1Q92743 480 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 SH3KBP1Q96B97 665 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 ASIC4Q96FT7 647 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 MAPKAP1Q9BPZ7 522 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 SIAEQ9HAT2 523 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 ZNF226Q9NYT6 803 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 PCDHGB6Q9Y5F9 930 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 SMAD6O43541 496 aaKnown RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 GREM1O60565 184 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 VIPP01282 170 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 PIPP12273 146 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 C21orf33P30042 268 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 OR1D2P34982 312 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 MAPK9P45984 424 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 PLD1Q13393 1074 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 ATP13A5Q4VNC0 1218 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 ARMCX4Q5H9R4 360 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 SPANXN2Q5MJ10 180 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 MPP7Q5T2T1 576 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 LRRC66Q68CR7 880 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 TAS1R1Q7RTX1 841 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 TSPAN33Q86UF1 283 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 CCDC190Q86UF4 302 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 SLC5A8Q8N695 610 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 FLCNQ8NFG4 579 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 CLP1Q92989 425 aaKnown RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 P2RY13Q9BPV8 354 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 BHLHE41Q9C0J9 482 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 TMEM38AQ9H6F2 299 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 PAK6Q9NQU5 681 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 CRNNQ9UBG3 495 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-208ENST00000543633 ATP6V1HQ9UI12 483 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 LRFN2Q9ULH4 789 aa13.22□□□□□ -0.29
VPS33A-208ENST00000543633 ALPK3Q96L96 1907 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 TLL1O43897 1013 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 ABLIM3O94929 683 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 IFNA14P01570 189 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 ATP1B2P14415 290 aaPredicted RBP13.21□□□□□ -0.29
VPS33A-208ENST00000543633 SNRPD1P62314 119 aaKnown RBP13.21□□□□□ -0.29
VPS33A-208ENST00000543633 FPGSQ05932 587 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 HSPA14Q0VDF9 509 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 E2F2Q14209 437 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 TAF12Q16514 161 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 SLC30A8Q8IWU4 369 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 APCDD1Q8J025 514 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 LGI4Q8N135 537 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 METTL4Q8N3J2 472 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 CPXM2Q8N436 756 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 SPPL2AQ8TCT8 520 aa13.21□□□□□ -0.29
VPS33A-208ENST00000543633 FAM83CQ9BQN1 747 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms