RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 OR52N2Q8NGI0 321 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 ING5Q8WYH8 240 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 SUSD6Q92537 303 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 NEIL2Q969S2 332 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 NXPE3Q969Y0 559 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 HSPBAP1Q96EW2 488 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 EGLN2Q96KS0 407 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 ZDHHC5Q9C0B5 715 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 TRIT1Q9H3H1 467 aaKnown RBP9.49□□□□□ -0.89
SS18-205ENST00000542420 FBRSQ9HAH7 460 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 WASH6PQ9NQA3 447 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 ADPRHL2Q9NX46 363 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 BAG5Q9UL15 447 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 TDRKHQ9Y2W6 561 aaKnown RBP9.49□□□□□ -0.89
SS18-205ENST00000542420 MYOCOSA0A1B0GUC4 107 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 LOC100130705A0A1B0GUX0 176 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 GABRR3A8MPY1 467 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 GPR37L1O60883 481 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 JRKO75564 520 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 POP7O75817 140 aaKnown RBP9.49□□□□□ -0.89
SS18-205ENST00000542420 CRHBPP24387 322 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 PXNP49023 591 aaPredicted RBP9.49□□□□□ -0.89
SS18-205ENST00000542420 PSMD7P51665 324 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 RPS13P62277 151 aaKnown RBP9.49□□□□□ -0.89
SS18-205ENST00000542420 HTRA3P83110 453 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 GPM6BQ13491 265 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 SLBPQ14493 270 aaKnown RBP eCLIP9.49□□□□□ -0.89
SS18-205ENST00000542420 KDM4DQ6B0I6 523 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 FAM71E1Q6IPT2 247 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 ZCCHC8Q6NZY4 707 aaKnown RBP9.49□□□□□ -0.89
SS18-205ENST00000542420 ZNF621Q6ZSS3 439 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 C11orf96Q7Z7L8 435 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 TMPRSS11BQ86T26 416 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 TRAPPC5Q8IUR0 188 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 SYTL1Q8IYJ3 562 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 CFAP206Q8IYR0 622 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 C11orf65Q8NCR3 313 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 NUDT8Q8WV74 236 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 MUS81Q96NY9 551 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 QRFPRQ96P65 431 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 ZNF347Q96SE7 839 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 PSD2Q9BQI7 771 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 WRAP53Q9BUR4 548 aaKnown RBP9.49□□□□□ -0.89
SS18-205ENST00000542420 OR2AG1Q9H205 316 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 TMEFF2Q9UIK5 374 aaPredicted RBP9.49□□□□□ -0.89
SS18-205ENST00000542420 ADAM29Q9UKF5 820 aa9.49□□□□□ -0.89
SS18-205ENST00000542420 HEPACAM2A8MVW5 462 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 NOL3O60936 208 aaKnown RBP9.48□□□□□ -0.89
SS18-205ENST00000542420 SEC14L2O76054 403 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 KRT75O95678 551 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ADH1BP00325 375 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 IFNA14P01570 189 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 FURINP09958 794 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 LAMP1P11279 417 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 PCNAP12004 261 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 PDHA2P29803 388 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 TRA2BP62995 288 aaKnown RBP9.48□□□□□ -0.89
SS18-205ENST00000542420 PLIN5Q00G26 463 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 KCNAB2Q13303 367 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 RGNQ15493 299 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 PRAMEF14Q5SWL7 426 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 C6orf141Q5SZD1 244 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ZNF648Q5T619 568 aaPredicted RBP9.48□□□□□ -0.89
SS18-205ENST00000542420 PRAMEF13Q5VWM6 474 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 SPESP1Q6UW49 350 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 LINC00299Q6ZSB3 139 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ZNF551Q7Z340 670 aaPredicted RBP9.48□□□□□ -0.89
SS18-205ENST00000542420 LRRTM4Q86VH4 590 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 FAM129CQ86XR2 697 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 CROCCP3Q8IVE0 287 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ZNF547Q8IVP9 402 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 RAB42Q8N4Z0 105 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 PIK3C3Q8NEB9 887 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 OR13F1Q8NGS4 319 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 SNX19Q92543 992 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ISOC1Q96CN7 298 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 MTERF1Q99551 399 aaKnown RBP9.48□□□□□ -0.89
SS18-205ENST00000542420 PITX2Q99697 317 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 EBPLQ9BY08 206 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 CXorf21Q9HAI6 301 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 CCNB1IP1Q9NPC3 277 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ACSL5Q9ULC5 683 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ZNF451Q9Y4E5 1061 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 V9GYQ6 96 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 A0A1B0GTW7 788 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 LRATO95237 230 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ETHE1O95571 254 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 MYCLP1P12525 358 aaPredicted RBP9.48□□□□□ -0.89
SS18-205ENST00000542420 ZNF8P17098 575 aaPredicted RBP9.48□□□□□ -0.89
SS18-205ENST00000542420 JUNDP17535 347 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ITIH1P19827 911 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ZNF630Q2M218 657 aaPredicted RBP9.48□□□□□ -0.89
SS18-205ENST00000542420 CCSMST1Q4G0I0 132 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 FAHD1Q6P587 224 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 TRIM40Q6P9F5 258 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 KCTD8Q6ZWB6 473 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 PAGE2Q7Z2X7 111 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 AMZ2Q86W34 360 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ANKRD46Q86W74 232 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 CHDHQ8NE62 594 aaPredicted RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms