RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 BCL6P41182 706 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 TSFMP43897 325 aaKnown RBP16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 AVPR1BP47901 424 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 CYP4F3Q08477 520 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 FRMPD2BQ6IN97 320 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 PWWP2BQ6NUJ5 590 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 NLGN4XQ8N0W4 816 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 AFAP1L2Q8N4X5 818 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 ZNF248Q8NDW4 579 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 NLGN4YQ8NFZ3 816 aaPredicted RBP16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 TRPC4APQ8TEL6 797 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 CMTM7Q96FZ5 175 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 CCT7Q99832 543 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 ELOVL6Q9H5J4 265 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 ZBTB26Q9HCK0 441 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 CUTCQ9NTM9 273 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 SH2B3Q9UQQ2 575 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 ASB1Q9Y576 335 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 ACACAQ13085 2346 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 IGSF10Q6WRI0 2623 aa16.71■□□□□ 0.27
CLSTN3-210ENST00000540931 A0A1W2PNU3 283 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 FEZF1A0PJY2 475 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 OR7A17O14581 309 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 DSCR3O14972 297 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 NDUFS4O43181 175 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 SASH3O75995 380 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 KIAA0754O94854 1291 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 SERPINE1P05121 402 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 HMOX2P30519 316 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 PPP2R2AP63151 447 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 YBX1P67809 324 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 TRAF3Q13114 568 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 RCN2Q14257 317 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 DEFB110Q30KQ9 67 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 FRG2Q64ET8 278 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 C7orf57Q8NEG2 295 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 OR7G3Q8NG95 312 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 OR4F6Q8NGB9 312 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 SNIP1Q8TAD8 396 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 KIAA1143Q96AT1 154 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 ARL8AQ96BM9 186 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 FRG2BQ96QU4 278 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 CTRCQ99895 268 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 GSTO2Q9H4Y5 243 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 BRF2Q9HAW0 419 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 APMAPQ9HDC9 416 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 AHSPQ9NZD4 102 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 APC2O95996 2303 aa16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 SNRNP200O75643 2136 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-210ENST00000540931 LOC105369274A0A096LPK9 316 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 LOC102723532A0A0G2JNH3 316 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 C21orf140B9A014 251 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 C9J4A7 227 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 H0YIG0 161 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 RRP8O43159 456 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 LCMT2O60294 686 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 ULK1O75385 1050 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 DLGAP3O95886 979 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 ONECUT2O95948 504 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 IL10P22301 178 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 CDH13P55290 713 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 DCDP81605 110 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 MEF2AQ02078 507 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 CPSF6Q16630 551 aaKnown RBP eCLIP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 SOWAHCQ53LP3 525 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 TMEM214Q6NUQ4 689 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 TRIM40Q6P9F5 258 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 C19orf48Q6RUI8 117 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 VN1R4Q7Z5H5 301 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 OR4N4Q8N0Y3 316 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 GBP7Q8N8V2 638 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 ANKRD42Q8N9B4 389 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 OR52B6Q8NGF0 335 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 METTL6Q8TCB7 284 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 GAL3ST3Q96A11 431 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 FAR2Q96K12 515 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 SERPINI1Q99574 410 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 PAIP2Q9BPZ3 127 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 GATA5Q9BWX5 397 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 GPR87Q9BY21 358 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 SPRY4Q9C004 299 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 SLC6A16Q9GZN6 736 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 SPRTNQ9H040 489 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 ANKHQ9HCJ1 492 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 MID1IP1Q9NPA3 183 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 ZNF446Q9NWS9 450 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 KCND3Q9UK17 655 aa16.69■□□□□ 0.26
CLSTN3-210ENST00000540931 SERTM1A2A2V5 107 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 LRRC14BA6NHZ5 514 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 MEN1O00255 615 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 NSA2O95478 260 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 ALBP02768 609 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 SERPIND1P05546 499 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 FGF4P08620 206 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 UROSP10746 265 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 PCNAP12004 261 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 ALAS2P22557 587 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 GCGRP47871 477 aa16.68■□□□□ 0.26
CLSTN3-210ENST00000540931 CUL3Q13618 768 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms