RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ETS2P15036 469 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 KDELR2P33947 212 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 CBLL1Q75N03 491 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 YAF2Q8IY57 180 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 TP53I13Q8NBR0 393 aaPredicted RBP13.23□□□□□ -0.29
RTN3-210ENST00000540798 VPS37AQ8NEZ2 397 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 SNRNP27Q8WVK2 155 aaKnown RBP13.23□□□□□ -0.29
RTN3-210ENST00000540798 TFGQ92734 400 aaPredicted RBP13.23□□□□□ -0.29
RTN3-210ENST00000540798 IL17FQ96PD4 163 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 RHBGQ9H310 441 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 PELI2Q9HAT8 420 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 MBNL1Q9NR56 388 aaKnown RBP13.23□□□□□ -0.29
RTN3-210ENST00000540798 SERGEFQ9UGK8 458 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 GNG14A0A1W2PPG7 69 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 TBX6O95947 436 aaPredicted RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 CDH2P19022 906 aaPredicted RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 HSD17B2P37059 387 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 MVDP53602 400 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 CCNYL2Q5T2Q4 361 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 CLEC4FQ8N1N0 589 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 WDR48Q8TAF3 677 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 C16orf78Q8WTQ4 265 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 MTERF3Q96E29 417 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 KXD1Q9BQD3 176 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 TOR3AQ9H497 397 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 IGFLR1Q9H665 355 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 WASH6PQ9NQA3 447 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 TM7SF3Q9NS93 570 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 ZNF282Q9UDV7 671 aaPredicted RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 ZFR2Q9UPR6 939 aaKnown RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 TICRRQ7Z2Z1 1910 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 KMOO15229 486 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 SH3BGRLO75368 114 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 KIR2DL1P43626 348 aaPredicted RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 CRYBA2P53672 197 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 VAC14Q08AM6 782 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 FGL2Q14314 439 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 RGNQ15493 299 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 ITPRIPL2Q3MIP1 535 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 SHQ1Q6PI26 577 aaKnown RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 EIF3MQ7L2H7 374 aaKnown RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 ZDHHC21Q8IVQ6 265 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 HS3ST5Q8IZT8 346 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 ZNF740Q8NDX6 193 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 CDC26Q8NHZ8 85 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 SDCCAG3Q96C92 435 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 ERLEC1Q96DZ1 483 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 MUS81Q96NY9 551 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 AMBRA1Q9C0C7 1298 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 NKX2-4Q9H2Z4 354 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 SMURF2Q9HAU4 748 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 FAM118AQ9NWS6 357 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 VNN3Q9NY84 501 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 SPATA7Q9P0W8 599 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 TMEFF2Q9UIK5 374 aaPredicted RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 RPS6KA6Q9UK32 745 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 PLAGL1Q9UM63 463 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 VPS4AQ9UN37 437 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 PRR19A6NJB7 356 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 DPM1O60762 260 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 TGFB1P01137 390 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 RPN2P04844 631 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 SHMT2P34897 504 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 RPL3P39023 403 aaKnown RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 MEF2AQ02078 507 aaPredicted RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 HYAL1Q12794 435 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 C16orf72Q14CZ0 275 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 MPEG1Q2M385 716 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 ZC3H12BQ5HYM0 836 aaKnown RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 PARM1Q6UWI2 310 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 IKBIPQ70UQ0 350 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 PIWIL3Q7Z3Z3 882 aaKnown RBP13.22□□□□□ -0.29
RTN3-210ENST00000540798 HIPK1Q86Z02 1210 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 FGF14Q92915 247 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 TMIGD2Q96BF3 282 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 OR51B5Q9H339 312 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 FZD4Q9ULV1 537 aa13.22□□□□□ -0.29
RTN3-210ENST00000540798 NUP214P35658 2090 aaPredicted RBP13.21□□□□□ -0.29
RTN3-210ENST00000540798 DOCK9Q9BZ29 2069 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 H3BSA7 217 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 PFDN1O60925 122 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 PTX3P26022 381 aaPredicted RBP13.21□□□□□ -0.29
RTN3-210ENST00000540798 PCGF2P35227 344 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 TNFRSF4P43489 277 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 SH3BGRP55822 239 aaPredicted RBP13.21□□□□□ -0.29
RTN3-210ENST00000540798 PHEXP78562 749 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 IRF4Q15306 451 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 IQCCQ4KMZ1 466 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 TMIGD1Q6UXZ0 262 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 B3GNT6Q6ZMB0 384 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 R3HCC1LQ7Z5L2 792 aaKnown RBP13.21□□□□□ -0.29
RTN3-210ENST00000540798 ABHD11Q8NFV4 315 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 MRPL38Q96DV4 380 aaKnown RBP13.21□□□□□ -0.29
RTN3-210ENST00000540798 DPH2Q9BQC3 489 aaPredicted RBP13.21□□□□□ -0.29
RTN3-210ENST00000540798 TM9SF3Q9HD45 589 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 GPATCH2Q9NW75 528 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 IFT80Q9P2H3 777 aaPredicted RBP13.21□□□□□ -0.29
RTN3-210ENST00000540798 THEGQ9P2T0 379 aa13.21□□□□□ -0.29
RTN3-210ENST00000540798 COL4A2P08572 1712 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms