RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 COL26A1Q96A83 441 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 REPS1Q96D71 796 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ZIM3Q96PE6 472 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 NTMT1Q9BV86 223 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 SLC26A1Q9H2B4 701 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 PRORYQ9H606 182 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ACTR8Q9H981 624 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 CPNE5Q9HCH3 593 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ANKHQ9HCJ1 492 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ARGLU1Q9NWB6 273 aaPredicted RBP13.57□□□□□ -0.24
NUP54-216ENST00000514901 PCTPQ9UKL6 214 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 ZNF490Q9ULM2 529 aaPredicted RBP13.57□□□□□ -0.24
NUP54-216ENST00000514901 PLLPQ9Y342 182 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 TSC22D4Q9Y3Q8 395 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 PCDHGA11Q9Y5H2 935 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 FER1L5A0AVI2 2057 aa13.57□□□□□ -0.24
NUP54-216ENST00000514901 LRRC14BA6NHZ5 514 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 FOXS1O43638 330 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 PLIN3O60664 434 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 CREG1O75629 220 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 MED26O95402 600 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 NSA2O95478 260 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 CLDN9O95484 217 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 RPS17P08708 135 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 OR1D4P47884 311 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 STXBP1P61764 594 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 CXADRP78310 365 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 SRSF6Q13247 344 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 DSG2Q14126 1118 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 ARHGAP40Q5TG30 622 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 MRPL14Q6P1L8 145 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 C19orf48Q6RUI8 117 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 GPR155Q7Z3F1 870 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.56□□□□□ -0.24
NUP54-216ENST00000514901 LAS2Q8IYD9 372 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 ENDOVQ8N8Q3 282 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 L3MBTL4Q8NA19 623 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 KCT2Q8NC54 265 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 MYRIPQ8NFW9 859 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 ZNF483Q8TF39 744 aaPredicted RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 MMABQ96EY8 250 aaPredicted RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 APOPT1Q96IL0 206 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 SLC6A16Q9GZN6 736 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 ACTL8Q9H568 366 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 NOL11Q9H8H0 719 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 WDR54Q9H977 334 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 CLK4Q9HAZ1 481 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 NXT1Q9UKK6 140 aaKnown RBP13.56□□□□□ -0.24
NUP54-216ENST00000514901 TCFL5Q9UL49 500 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 EMCNQ9ULC0 261 aa13.56□□□□□ -0.24
NUP54-216ENST00000514901 G3V2L1 256 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 H0YIV9 168 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 OTCP00480 354 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 MYZAPP0CAP1 466 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 CPA3P15088 417 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 WT1P19544 449 aaPredicted RBP13.55□□□□□ -0.24
NUP54-216ENST00000514901 CD22P20273 847 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 ITGAXP20702 1163 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 FBLP22087 321 aaKnown RBP13.55□□□□□ -0.24
NUP54-216ENST00000514901 DNAJB13P59910 316 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 OCA2Q04671 838 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 TGM3Q08188 693 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 ZNF678Q5SXM1 525 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 C10orf62Q5T681 223 aaPredicted RBP13.55□□□□□ -0.24
NUP54-216ENST00000514901 MILR1Q7Z6M3 343 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 AFAP1L2Q8N4X5 818 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 CCDC63Q8NA47 563 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 SRFBP1Q8NEF9 429 aaKnown RBP13.55□□□□□ -0.24
NUP54-216ENST00000514901 CCT6BQ92526 530 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 L3HYPDHQ96EM0 354 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 PGM2Q96G03 612 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 CATSPER2Q96P56 530 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 MACROD1Q9BQ69 325 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 STMN4Q9H169 189 aaPredicted RBP13.55□□□□□ -0.24
NUP54-216ENST00000514901 SLC22A11Q9NSA0 550 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 ZNF282Q9UDV7 671 aaPredicted RBP13.55□□□□□ -0.24
NUP54-216ENST00000514901 STK38LQ9Y2H1 464 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 MAP4K5Q9Y4K4 846 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 MAU2Q9Y6X3 613 aa13.55□□□□□ -0.24
NUP54-216ENST00000514901 IGLV3-12A0A075B6K2 115 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 A0A088AWK7 358 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 A0A0A6YYC8 382 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 LRIT2A6NDA9 550 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 GOLGA6L10A6NI86 522 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 VSTM2BA6NLU5 285 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 I3L1I5 382 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 OR7A17O14581 309 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 NKX2-8O15522 239 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 KLF7O75840 302 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 SUPT7LO94864 414 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 MLYCDO95822 493 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 STATHP02808 62 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 SMIM10L1P0DMW3 83 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 ALOX12P18054 663 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 ZNF10P21506 573 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 ARL1P40616 181 aaPredicted RBP13.54□□□□□ -0.24
NUP54-216ENST00000514901 PIK3CBP42338 1070 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 CYP4F2P78329 520 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 PHEXP78562 749 aa13.54□□□□□ -0.24
NUP54-216ENST00000514901 CLCQ05315 142 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms