RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 RTP4Q96DX8 246 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 DCUN1D1Q96GG9 259 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CDKN2AIPNLQ96HQ2 116 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 TGM7Q96PF1 710 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 ALS2CR12Q96Q35 445 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 VPS35Q96QK1 796 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CTRCQ99895 268 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 WWP1Q9H0M0 922 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 LRRC40Q9H9A6 602 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 CHRAC1Q9NRG0 131 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 NLE1Q9NVX2 485 aaPredicted RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 SLC39A1Q9NY26 324 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 OGFRQ9NZT2 677 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 ZIM2Q9NZV7 527 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 NFKBIL1Q9UBC1 381 aaPredicted RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 CRLS1Q9UJA2 301 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 TTC7AQ9ULT0 858 aaPredicted RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 PYCARDQ9ULZ3 195 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 DRG1Q9Y295 367 aaKnown RBP4.41□□□□□ -1.7
NUP54-206ENST00000508465 LOXL2Q9Y4K0 774 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 PRSS21Q9Y6M0 314 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 APC2O95996 2303 aa4.41□□□□□ -1.7
NUP54-206ENST00000508465 KIR2DS5A0A0G2JLQ3 304 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 A0A0G2JNG1 304 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 OR6C74A6NCV1 312 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 MGAT4DA6NG13 374 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 LINC00473A8K010 186 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 EFCAB7A8K855 629 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 IQCF5A8MTL0 148 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 CDRT15L2A8MXV6 281 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 GPR89AB7ZAQ6 455 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 TMX2-CTNND1H3BSU7 103 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 GOLGA8MH3BSY2 632 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 KIR2DS3K7RE56 304 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 OR1I1O60431 355 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 UBXN7O94888 489 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 SUN1O94901 812 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 CHRM2P08172 466 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 F7P08709 466 aaPredicted RBP4.4□□□□□ -1.71
NUP54-206ENST00000508465 GPR89BP0CG08 455 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ATP1B2P14415 290 aaPredicted RBP4.4□□□□□ -1.71
NUP54-206ENST00000508465 VCLP18206 1134 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 XRCC1P18887 633 aaPredicted RBP4.4□□□□□ -1.71
NUP54-206ENST00000508465 GATA3P23771 443 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 NMBRP28336 390 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 PDHA2P29803 388 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 CCKBRP32239 447 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 CSTF2P33240 577 aaKnown RBP eCLIP4.4□□□□□ -1.71
NUP54-206ENST00000508465 FDFT1P37268 417 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 FASLGP48023 281 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 NEK2P51955 445 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 GFERP55789 205 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ERVPABLB-1P60509 514 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 PPP1CAP62136 330 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 BASP1P80723 227 aaKnown RBP4.4□□□□□ -1.71
NUP54-206ENST00000508465 TLE3Q04726 772 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 GPS1Q13098 491 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 PRKG2Q13237 762 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 SEMA5AQ13591 1074 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ITGA9Q13797 1035 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 GPR18Q14330 331 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 KRT33BQ14525 404 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 SEMA3AQ14563 771 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 KIR2DS5Q14953 304 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 NR1D2Q14995 579 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ETFDHQ16134 617 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 MUM1Q2TAK8 710 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 P3H1Q32P28 736 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 KLHL22Q53GT1 634 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ARHGAP40Q5TG30 622 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ANKRD22Q5VYY1 191 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 MORN5Q5VZ52 161 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ZDHHC20Q5W0Z9 365 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 TMEM71Q6P5X7 295 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 FBXO38Q6PIJ6 1188 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ABRAXAS1Q6UWZ7 409 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 FAM92BQ6ZTR7 304 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 SNX20Q7Z614 316 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ZBTB46Q86UZ6 589 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 VASH2Q86V25 355 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 LSMEM2Q8N112 164 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 MYO1HQ8N1T3 1032 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 C17orf53Q8N3J3 647 aaPredicted RBP4.4□□□□□ -1.71
NUP54-206ENST00000508465 LMNTD1Q8N9Z9 388 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 DDHD1Q8NEL9 900 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 OR4E2Q8NGC2 313 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 OR4D9Q8NGE8 314 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 OR10G6Q8NH81 332 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 TSPEARQ8WU66 669 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 STYXQ8WUJ0 223 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 KCNE4Q8WWG9 221 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ART4Q93070 314 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 SH3KBP1Q96B97 665 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 LRRC45Q96CN5 670 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 GRAMD1AQ96CP6 724 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ELMO2Q96JJ3 720 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 ZNF48Q96MX3 618 aaPredicted RBP4.4□□□□□ -1.71
NUP54-206ENST00000508465 ZNF578Q96N58 590 aaPredicted RBP4.4□□□□□ -1.71
NUP54-206ENST00000508465 PPP1R2P1Q96PQ5 205 aa4.4□□□□□ -1.71
NUP54-206ENST00000508465 COPS8Q99627 209 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms