RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 ARHGDIAP52565 204 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 TMBIM6P55061 237 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 PLCL1Q15111 1095 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 RGNQ15493 299 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 HKDC1Q2TB90 917 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 IQCCQ4KMZ1 466 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 CCDC80Q76M96 950 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 TRAPPC5Q8IUR0 188 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 CLECL1Q8IZS7 167 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 NATD1Q8N6N6 113 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 SETD9Q8NE22 299 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 FOXJ1Q92949 421 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 SH3KBP1Q96B97 665 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 EPYCQ99645 322 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 NT5DC2Q9H857 520 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 PELI2Q9HAT8 420 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 DYRK4Q9NR20 520 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 COQ6Q9Y2Z9 468 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 PCDHGB1Q9Y5G3 927 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 PCDHGA8Q9Y5G5 932 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 PCM1Q15154 2024 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 K7ESM1 405 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 LZTS3O60299 673 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-212ENST00000477970 JRKO75564 520 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 POP7O75817 140 aaKnown RBP11.74□□□□□ -0.53
PTPRF-212ENST00000477970 CXCR4P61073 352 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 SLBPQ14493 270 aaKnown RBP eCLIP11.74□□□□□ -0.53
PTPRF-212ENST00000477970 DUSP6Q16828 381 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 ZIK1Q3SY52 487 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-212ENST00000477970 POM121L1PQ3SYA9 428 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 FAM71E1Q6IPT2 247 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 SYTL1Q8IYJ3 562 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 CXorf40AQ8TE69 158 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 ZNF764Q96H86 408 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-212ENST00000477970 ASPSCR1Q9BZE9 553 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 RHBGQ9H310 441 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 RAD21L1Q9H4I0 556 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 LAMA3Q16787 3333 aa11.74□□□□□ -0.53
PTPRF-212ENST00000477970 NOBOXO60393 691 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 FURINP09958 794 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 ELK4P28324 431 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 PBLDP30039 288 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-212ENST00000477970 IST1P53990 364 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 FADDQ13158 208 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 TMEM184AQ6ZMB5 413 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 CLVS1Q8IUQ0 354 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-212ENST00000477970 SLC30A8Q8IWU4 369 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 PIK3C3Q8NEB9 887 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 RAD51AP1Q96B01 352 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 TMEM38AQ9H6F2 299 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 POLR1BQ9H9Y6 1135 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 VNN3Q9NY84 501 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 SPATA7Q9P0W8 599 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 FZD4Q9ULV1 537 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 ICKQ9UPZ9 632 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 MMP20O60882 483 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 E2F6O75461 281 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 SEMA3DO95025 777 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 RPN2P04844 631 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 FCARP24071 287 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 PIGAP37287 484 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 MVDP53602 400 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 MESP2Q0VG99 397 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 ENPP2Q13822 863 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 DDX39BQ13838 428 aaKnown RBP11.73□□□□□ -0.53
PTPRF-212ENST00000477970 FAM46CQ5VWP2 391 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 XAF1Q6GPH4 301 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 FAHD1Q6P587 224 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 COMMD6Q7Z4G1 85 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 FAM129CQ86XR2 697 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 DCUN1D3Q8IWE4 304 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 ZC3H7AQ8IWR0 971 aaKnown RBP11.73□□□□□ -0.53
PTPRF-212ENST00000477970 C12orf43Q96C57 262 aaKnown RBP11.73□□□□□ -0.53
PTPRF-212ENST00000477970 A8MVJ9 347 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 HS6ST1O60243 411 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 GPR37L1O60883 481 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 KLHL18O94889 574 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 FKBP9O95302 570 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 JUNDP17535 347 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 IGFBP4P22692 258 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 PTX3P26022 381 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-212ENST00000477970 P2RY2P41231 377 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 CTBSQ01459 385 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 CYP2A13Q16696 494 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 CATSPEREQ5SY80 951 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 PIP5KL1Q5T9C9 394 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 LAIR2Q6ISS4 152 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 OR52N2Q8NGI0 321 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 HSH2DQ96JZ2 352 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 C7orf34Q96L11 122 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 WASH6PQ9NQA3 447 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 DZANK1Q9NVP4 752 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 ABCG2Q9UNQ0 655 aa11.73□□□□□ -0.53
PTPRF-212ENST00000477970 OTOL1A6NHN0 477 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-212ENST00000477970 TNFRSF21O75509 655 aa11.72□□□□□ -0.53
PTPRF-212ENST00000477970 CPSF4O95639 269 aaKnown RBP11.72□□□□□ -0.53
PTPRF-212ENST00000477970 HLA-EP13747 358 aa11.72□□□□□ -0.53
PTPRF-212ENST00000477970 FSHRP23945 695 aa11.72□□□□□ -0.53
PTPRF-212ENST00000477970 IGFBP5P24593 272 aa11.72□□□□□ -0.53
PTPRF-212ENST00000477970 PXNP49023 591 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms